Finding Semirigid Domains in Biomolecules by Clustering Pair-Distance Variations

Table 2

Dispersion of pair-distances within and between clusters.

	1	2	3	4	5	6
1	0.058	0.115	0.093	0.145	0.178	0.167
2	0.115	0.068	0.146	0.193	0.219	0.129
3	0.093	0.146	0.079	0.123	0.175	0.212
4	0.145	0.193	0.123	0.075	0.210	0.264
5	0.178	0.219	0.175	0.210	0.090	0.241
6	0.167	0.129	0.212	0.264	0.241	0.124

The full trajectory of protein complex B4402 was clustered into 6 clusters. Numbers in main diagonal give averaged STDDVs [nm] within clusters, corresponding to left markers (symbols: mean, minimum, maximum) in Figure 8. Off-diagonal values relate to STDDV between clusters, corresponding to right marker in Figure 8.