Research Article
A De Novo Genome Assembly Algorithm for Repeats and Nonrepeats
Table 4
The effect of sliding window to SWA.
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Sequence length kb containing four kinds of repeats. Size of sliding window varies from 3 to 11. Contigs of repeat and nonrepeat are generated in an independent way by SWA at different levels with basic parameters: sequencing depth , filtered times = 1, read length , and . Contigs smaller than 200 are removed. |