Topography Prediction of Helical Transmembrane Proteins by a New Modification of the Sliding Window Method

Table 6

Prediction of TMDs calculated upon processing of hydrophobicity functions 𝑓_𝑛(𝑘) at 𝑛=5 on the scale 𝐻₅(𝑖) for the long 𝛼-helical membrane protein.

Protein name, code, length	Data source	Number and boundaries of transmembrane domains
	Scale	1	2	3	4	5	6
CAC1A_; RABIT P27884; 2424 aa	[21], potential	99–117	136–155	168–185	191–209	229–248	336–360
	𝐻5,𝑢=0.305	101–116	141–158	172–185	210–249	302–317	336–358
	Scale	7	8	9	10	11	12
	[21], potential	488–506	522–541	550–568	579–597	617–636	690–714
	𝐻5,𝑢=0.305	491–507	518–537	554–577	609–638	654–665	685–714
	Scale	13	14	15	16	17	18
	[21], potential	1254–1272	1289–1308	1321–1339	1351–1369	1389–1408	1496–1520
	𝐻5,𝑢=0.305	1255–1270	1293–1312	1323–1339	1384–1408	1456–1467	1497–1522
	Scale	19	20	21	22	23	24
	[21], potential	1576–1604	1610–1629	1638–1656	1666–1684	1704–1723	1796–1820
	𝐻5,𝑢=0.305	1575–1599	1607–1633	1641–1660	1691–1725	—	1794–1820