Improving the Mapping of Smith-Waterman Sequence Database Searches onto CUDA-Enabled GPUs

Table 1

The hardware configuration of the first experimental platform, where Tesla C1060 is included.

Intel Xeon processor E5504		NVIDIA Tesla C1060
Number of CPUs	1	Number of GPUs	1
Number of processor cores	4	Number of processor cores	240
Clock speed	2 GHz	Clock speed	1.3 GHz
Memory size	6 GB	Memory size	4 GB
Memory types	DDR3 800	Memory types	GDDR3
Cache	4 MB	Memory clock	800 MHz