Assessing Computational Steps for CLIP-Seq Data Analysis

Figure 1

Experimental design of LIN28B CLIP-Seq. There are three replicates in CLIP Caco-2 samples with input RNA (no antibody) as control samples, one replicate each for DLD1 and Lovo CLIP samples with mRNAseq as control, and two replicates for mouse colon epithelium CLIP with mRNAseq as control.