Research Article

Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model

Table 2

ENCODE transcription factor (TF) and ChEA database ChIP-seq enrichment analysis using upregulated genes in hrPC12 cells.

DatabaseTerm value-scoreCombined_scoreAdj. value

ChEASOX2-20726797-SW620-HUMAN
ChEAZNF217-24962896-MCF7-HUMAN
ChEASMAD3-18955504-HaCaT-human
ChEAESR1-22446102-UTERI-MOUSE
ChEATP53-18474530-U2OS-human
ChEAEP300-20729851-FORBRAIN_MIDBRAIN_LIMB_HEART-MOUSE
ENCODE_TF_ChIP-seq_2015TCF12_myocyte_mm9
ENCODE_TF_ChIP-seq_2015MYOD1_C2C12_mm9
ENCODE_TF_ChIP-seq_2015MYOD1_myocyte_mm9
ChEASOX2-18358816-MESC-mouse

Top 10 significant databases (adj. value (Benjamini and Hochberg) < 0.05 and -score < −1.5) ordered by combined score (). For ChEA databases a PMID PubMed id is given after the TF. mm9 stays for Mus musculus genome assembly NCBI Build 37.