Research Article
Complete Nucleotide Sequence Analysis of the Norovirus GII.4 Sydney Variant in South Korea
Table 1
Information of primers used in this study.
| Region | Primers | Sequence (5′-3′) | Polarity | Positiona | Reference |
| ORF1-ORF2 | GII-F1M | GGG AGG GCG ATC GCA ATC T | + | 5049–5067 | | GII-R1M | CCR CCI GCA TRI CCR TTR TAC AT | − | 5367–5389 | |
| ORF1 | ORF1-1F | GTG AAT GAA GAT GGC GTC TA | + | 1–20 |
[23] | ORF1-1R | AGT CTT GGT AGG GCC TAA AG | − | 697–716 | ORF1-2F | GGC TAA GCA GGA GAA TGA TTC A | + | 660–681 | In this study | ORF1-2R | GAG AGT TGA TTG TGC CCA CA | − | 1375–1394 | ORF1-3F | CCA AGT CTG CTT CAC CTG AC | + | 1353–1372 |
[23] | ORF1-3R | GGG TGT TTC CGT TCT TGT C | − | 1976–1994 | ORF1-4F | ACT GTC ATT GGC TCC ACA G | + | 1948–1966 | In this study | ORF1-4R | TGT GTG CTT CTT GCC ACG | − | 2657–2674 | ORF1-5F | GAC GAC ATC AAA ACT GAG GGC | + | 2612–2632 | ORF1-5R | TCT TGA TGA GCA GTG TGG C | − | 3275–3293 | ORF1-6F | GGC ATG ATC TTG GAA GAA GG | + | 3236–3255 |
[23] | ORF1-6R | ATG CTT GCG CGA ATG ACC | − | 3882–3899 | ORF1-7F | GGC TGC CAA GAA AAC CAT C | + | 3823–3841 | ORF1-7R | ACC TCA GAA AGT GCA CAG AG | − | 4523–4542 | ORF1-8F | CCA ATG GAA TTC CAT CGC CC | + | 4489–4508 | ORF1-8R | CGA CGC CAT CTT CAT TCA CA | − | 5080–5099 |
| ORF2 | ORF2-F1 | AAG AGC CAA TGT TCA GAT GG | + | 5004–5023 |
[22] | ORF2-R1 | CTC TGA AGG TGC AGA TGT T | − | 5928–5946 | ORF2-F2 | AAC ATC TGC ACC TTC AGA G | + | 5928–5946 | ORF2-R2 | GAA GCC TGT TGT AGA TTG CT | − | 6854–6873 |
| ORF3 | ORF 3F | ATG GCT GGA GCT TTC TTT GCT | + | 6704–6724 | | ORF 3R | AAA GAC ACT AAA GAA AGG AAA GAT | − | 7532–7555 | |
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Positions are indicated relative to the Lordsdale strain (GenBank accession number X86557).
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