ProGeRF: Proteome and Genome Repeat Finder Utilizing a Fast Parallel Hash Function

Figure 2

Creating degeneration hash table: Step  1: sliding window maps each motif of the sequence for a position in the degeneration hash table and sets value 1 to mapped position. Step  2: generate possible degeneration of the sliding window and store in the buffer at position of the sliding window; only the degeneration that mapped to a position of the hash table presents a value of 1.