Predicting Flavin and Nicotinamide Adenine Dinucleotide-Binding Sites in Proteins Using the Fragment Transformation Method

Figure 1

Amino acid frequencies within NAD-/FAD-binding sites. Frequencies within NAD-/FAD-binding sites (black) are compared with whole-protein frequencies (white). (a) Adenosine-binding of NAD. (b) Phosphate-binding of NAD. (c) Nicotinamide-binding of NAD. (d) Adenosine-binding of FAD. (e) Phosphate-binding of FAD. (f) Flavin-binding of FAD. The preferred types of amino acids surrounding the different moiety of NAD/FAD are shown.

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