|
|
Microorganism groups |
# of
isolates |
Correct Identification | Misidentification | No-identification |
|
Species | Genus only | | | | |
|
VITEK | Bruker | VITEK | Bruker | VITEK | Bruker | VITEK | Bruker |
| Species | Species Complex |
|
| Nonfermentatives (16 species) |
| Achromobacter xylosoxidans | 6 | 4 | 2 | 6 | — | — | — | — | — | — |
| Acinetobacter baumannii | 194 | — | 192 | 192 | — | — | — | — | 2
(F × 2) | 2
(F × 2) |
| Acinetobacter guillouiae | 1 | — | 1 | 1 | — | — | — | — | — | — |
| Acinetobacter johnsonii | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Acinetobacter lwoffii | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Acinetobacter radioresistens | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Aeromonas hydrophila | 3 | — | 3 | 2 | — | 1 (C) | — | — | — | — |
| Aeromonas sobria | 1 | — | 1 | — | — | — | — | — | — | 1
(F) |
| Alcaligenes faecalis | 2 | 2 | — | 2 | — | — | — | — | — | — |
| Burkholderia cepacia | 2 | — | 2 | — | — | 2 (C × 2) | — | — | — | — |
| Comamonas aquatica | 1 | — | — | 1 | — | — | 1 (D) | — | — | — |
| Delftia acidovorans | 3 | 3 | — | 3 | — | — | — | — | — | — |
| Elizabethkingia meningoseptica | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Pseudomonas aeruginosa | 125 | 124 | — | 125 | — | — | 1 (C) | — | — | — |
| Pseudomonas fluorescens | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Stenotrophomonas maltophilia | 13 | 13 | — | 13 | — | — | — | — | — | — |
| Total | 356 | 151 (42.4%) | 201 (56.4%) | 350 (98.4%) | — | 3 (0.8%) | 2 (0.6%) | — | 2
(0.6%) | 3
(0.8%) |
|
| Enterobacteriaceae (23 species) |
| Chryseobacterium indologenes | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Citrobacter braakii | 3 | — | 3 | 3 | — | — | — | — | — | — |
| Citrobacter freundii | 5 | 3 | 2 | 5 | — | — | — | — | — | — |
| Citrobacter sedlakii | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Citrobacter youngae | 2 | — | 2 | 1 | — | 1 (C) | — | — | — | — |
| Enterobacter aerogenes | 4 | 4 | — | 4 | — | — | — | — | — | — |
| Enterobacter asburiae | 2 | — | 2 | 1 | — | 1 (C) | — | — | — | — |
| Enterobacter cancerogenous | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Enterobacter cloacae | 11 | — | 11 | 9 | — | 2 (C × 2) | — | — | — | — |
| Escherichia coli | 123 | 123 | — | 123 | — | — | — | — | — | — |
| Klebsiella oxytoca | 5 | 5 | — | 5 | — | — | — | — | — | — |
| Klebsiella pneumonia | 64 | 64 | — | 64 | — | — | — | — | — | — |
| Kluyvera cryocrescens | 1 | — | — | — | — | — | — | — | 1
(G) | 1 (G) |
| Morganella morganii | 12 | 12 | — | 12 | — | — | — | — | — | — |
| Proteus mirabilis | 28 | 28 | — | 28 | — | — | — | — | — | — |
| Providencia rettgeri | 3 | 3 | — | 3 | — | — | — | — | — | — |
| Providencia stuartii | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Raoultella ornithinolytica | 3 | 2 | 1 | 3 | — | — | — | — | — | — |
| Raoultella planticola | 1 | — | 1 | 1 | — | — | — | — | — | — |
| Salmonella spp. | 15 | — | — | — | 15 | 15 | — | — | — | — |
| Serratia liquefaciens | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Serratia marcescens | 21 | 21 | — | 21 | — | — | — | — | — | — |
| Shigella boydii | 1 | — | — | — | — | — | 1 (N/A) | 1
(N/A) | — | — |
| Total | 309 | 270 (87.4%) | 22 (7.1%) | 288 (93.3%) | 15 (4.9%) | 19 (6.1%) | 1 (0.3%) | 1
(0.3%) | 1
(0.3%) | 1
(0.3%) |
|
| Staphylococci (10 species) |
| Staphylococcus aureus | 52 | 52 | — | 52 | — | — | — | — | — | — |
| Staphylococcus capitis | 8 | 8 | — | 8 | — | — | — | — | — | — |
| Staphylococcus caprae | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Staphylococcus epidermidis | 68 | 68 | — | 65 | — | — | — | 2
(C × 2) | — | 1 (F) |
| Staphylococcus haemolyticus | 54 | 54 | — | 54 | — | — | — | — | — | — |
| Staphylococcus hominis | 82 | 82 | — | 82 | — | — | — | — | — | — |
| Staphylococcus lugdunensis | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Staphylococcus pettenkoferi | 1 | — | — | 1 | 1 (C) | — | — | — | — | — |
| Staphylococcus sciuri | 2 | 2 | — | 2 | — | — | — | — | — | — |
| Staphylococcus simulans | 4 | 3 | — | 4 | 1 (D) | — | — | — | — | — |
| Total | 273 | 271 (99.3%) | — | 270 (98.9%) | 2 (0.7%) | — | — | 2
(0.7%) | — | 1
(0.4%) |
|
| Streptococci (11 species) |
| Leuconostoc mesenteroides | 1 | — | — | — | — | — | — | 1 (F) | 1
(F) | — |
| Streptococcus agalactiae | 9 | 9 | — | 9 | — | — | — | — | — | — |
| Streptococcus anginosus | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Streptococcus dysgalactiae | 3 | 3 | — | 3 | — | — | — | — | — | — |
| Streptococcus gallolyticus | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Streptococcus mitis | 1 | — | 1 | — | — | 1 (C) | — | — | — | — |
| Streptococcus oralis | 1 | — | 1 | 1 | — | — | — | — | — | — |
| Streptococcus parasanguinis | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Streptococcus pneumonia | 4 | 4 | — | 4 | — | — | — | — | — | — |
| Streptococcus pyogenes | 6 | 6 | — | 6 | — | — | — | — | — | — |
| Streptococcus salivarius | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Total | 29 | 26 (89.7%) | 2 (6.9%) | 27 (93.2%) | — | 1 (3.4%) | — | 1
(3.4%) | 1
(3.4%) | — |
|
| Enterococci and other Gr(+) cocci (5 species) |
| Aerococcus viridans | 4 | 4 | — | 4 | — | — | — | — | — | — |
| Enterococcus avium | 4 | 4 | — | 4 | — | — | — | — | — | — |
| Enterococcus faecalis | 54 | 54 | — | 54 | — | — | — | — | — | — |
| Enterococcus faecium | 84 | 84 | — | 84 | — | — | — | — | — | — |
| Enterococcus gallinarum | 14 | 14 | — | 14 | — | — | — | — | — | — |
| Total | 160 | 160 (100%) | — | 160 (100%) | — | — | — | — | — | — |
|
| Coryneforms and other Gr(+) bacilli (14 species) |
| Actinomyces naeslundii | 1 | — | — | — | — | 1 (F) | — | — | 1
(F) | — |
| Bacillus cereus | 1 | — | 1 | 1 | — | — | — | — | — | — |
| Bacillus simplex | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Corynebacterium amycolatum | 4 | — | 4 | 4 | — | — | — | — | — | — |
| Corynebacterium appendicis | 1 | — | — | — | 1 (E) | 1 (E) | — | — | — | — |
| Corynebacterium coyleae | 1 | — | — | 1 | — | — | 1 (D) | — | — | — |
| Corynebacterium glaucum | 1 | — | — | — | — | — | — | — | 1
(G) | 1 (G) |
| Corynebacterium jeikeium | 2 | 2 | — | 2 | — | — | — | — | — | — |
| Corynebacterium mucifaciens | 3 | — | — | 3 | — | — | 1 (D) | — | 2
(F) | — |
| Corynebacterium striatum | 10 | 10 | — | 10 | — | — | — | — | — | — |
| Corynebacterium urealyticum | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Corynebacterium ureicelerivorans | 2 | — | — | — | 1 (E) | 2 (E, F) | — | — | 1
(F) | — |
| Lactobacillus paracasei | 1 | — | 1 | 1 | — | — | — | — | — | — |
| Listeria monocytogenes | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Total | 30 | 15 (50.0%) | 6 (20.0%) | 25 (83.4%) | 2 (6.7%) | 4 (13.3%) | 2 (6.7%) | — | 5
(16.6%) | 1
(3.3%) |
|
| HACEK and other Gr(−) cocci (8 species) |
| Haemophilus haemolyticus | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Haemophilus influenza | 3 | 3 | — | 3 | — | — | — | — | — | — |
| Haemophilus parahaemolyticus | 2 | 2 | — | 2 | — | — | — | — | — | — |
| Haemophilus parainfluenzae | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Legionella pneumophila | 7 | 7 | — | 7 | — | — | — | — | — | — |
| Moraxella catarrhalis | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Neisseria meningitides | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Pasteurella multocida | 2 | 2 | — | 2 | — | — | — | — | — | — |
| Total | 18 | 18 (100%) | — | 18 (100%) | — | — | — | — | — | — |
|
| Anaerobes (2 species) |
| Clostridium perfringens | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Clostridium sporogenes | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Total | 2 | 2 (100%) | — | 2 (100%) | — | — | — | — | — | — |
|
| Others (4 species) |
| Bergeyella zoohelcum | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Myroides odoratimimus | 1 | 1 | — | — | — | 1 (C) | — | — | — | — |
| Rhodococcus equi | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Wautersiella falsenii | 1 | — | — | — | — | — | — | — | 1 (G) | 1 (G) |
| Total | 4 | 3 (75.0%) | — | 2 (50.0%) | — | 1 (C) (25.0%) | — | — | 1 (G)
(25.0%) | 1 (G) (25.0%) |
|
| Total (bacteria) | 1,181 | 916 (77.6%) | 231 (19.6%) | 1,142 (96.7%) | 19 (1.6%) | 28 (2.4%) | 5 (0.4%) | 4
(0.3%) | 10
(0.8%) | 7
(0.6%) |
|
| Fungi (14 species) |
| Aspergillus brasiliensis | 1 | — | — | 1 | — | — | — | — | 1 (F) | — |
| Candida albicans | 43 | 43 | — | 41 | — | 2 (C × 2) | — | — | — | — |
| Candida dubliniensis | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Candida glabrata | 44 | 44 | — | 44 | — | — | — | — | — | — |
| Candida kefyr | 11 | 11 | — | 11 | — | — | — | — | — | — |
| Candida krusei | 4 | 4 | — | 4 | — | — | — | — | — | — |
| Candida lusitaniae | 2 | 2 | — | 2 | — | — | — | — | — | — |
| Candida norvegensis | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Candida orthopsilosis | 2 | — | — | 2 | 2 (D × 2) | — | — | — | — | — |
| Candida parapsilosis | 14 | 14 | — | 13 | — | 1 (C) | — | — | — | — |
| Candida tropicalis | 32 | 31 | 1 | 32 | | | | | | |
| Cryptococcus neoformans | 1 | 1 | — | 1 | — | — | — | — | — | — |
| Meyerozyma caribbica | 1 | — | — | — | 1 (E) | 1 (E) | — | — | — | — |
| Trichosporon asahii | 3 | 3 | — | 3 | — | — | — | — | — | — |
| Total (fungi) | 160 | 155 (96.9%) | 1 (0.6%) | 156 (97.5%) | 3 (1.9%) | 4 (2.5%) | — | — | 1
(0.6%) | — |
|
| TOTAL (bacteria + fungi) | 1,341 | 1,071 (79.9%) | 232 (17.3%) | 1,298 (96.8%) | 22 (1.6%) | 32 (2.4%) | 5 (0.4%) | 4
(0.3%) | 11 (0.8%) | 7
(0.5%) |
| 1,303 (97.2%) |
|
