How to Isolate a Plant’s Hypomethylome in One Shot

Table 1

Allocation of the identified hypomethylated regions to the gene space in rice: the position of the identified hypomethylated regions is given in respect of the gene space together with the genomic area.

	AciI		HpaII		Combined
Hypomethylated regions
Total	98.355		84.874		129.810
Gene space (±1.000 bp)	76.295	78%	62.655	74%	96.717	75%
Upstream 1.000 bp	13.342	17%	10.876	17%	15.629	16%
Downstream 1.000 bp	7.739	10%	6.398	10%	9.556	10%
Gene body	55.214	72%	45.381	72%	71.532	74%
Exon	48.933	64%	41.034	65%	64.622	67%
Intron	6.281	8%	4.347	7%	6.910	7%
Genomic area [bp]
Total	36.155.399		46.965.884		69.808.680
Gene space (±1.000 bp)	28.580.311	79%	36.521.506	78%	54.732.127	78%
Upstream 1.000 bp	4.439.728	16%	5.111.923	14%	6.931.498	13%
Downstream 1.000 bp	2.650.795	9%	2.949.893	8%	4.235.613	8%
Gene body	21.489.788	75%	28.459.690	78%	43.565.016	80%
Exon	19.739.225	69%	27.027.474	74%	41.407.771	76%
Intron	1.750.563	6%	1.432.216	4%	2.157.245	4%