BioMed Research International

BioMed Research International / 2015 / Article
Special Issue

Advances in the Development of Biotherapeutics

View this Special Issue

Research Article | Open Access

Volume 2015 |Article ID 594120 |

F. C. Mariz, E. C. Coimbra, A. L. S. Jesus, L. M. Nascimento, F. A. G. Torres, A. C. Freitas, "Development of an IP-Free Biotechnology Platform for Constitutive Production of HPV16 L1 Capsid Protein Using the Pichia pastoris PGK1 Promoter", BioMed Research International, vol. 2015, Article ID 594120, 11 pages, 2015.

Development of an IP-Free Biotechnology Platform for Constitutive Production of HPV16 L1 Capsid Protein Using the Pichia pastoris PGK1 Promoter

Academic Editor: Juergen Mairhofer
Received18 Sep 2014
Revised18 Dec 2014
Accepted05 Jan 2015
Published18 May 2015


The human papillomavirus (HPV) L1 major capsid protein, which forms the basis of the currently available vaccines against cervical cancer, self-assembles into virus-like particles (VLPs) when expressed heterologously. We report the development of a biotechnology platform for HPV16 L1 protein expression based on the constitutive PGK1 promoter () from the methylotrophic yeast Pichia pastoris. The L1 gene was cloned under regulation of into pPGKΔ3 expression vector to achieve intracellular expression. In parallel, secretion of the L1 protein was obtained through the use of an alternative vector called pPGKΔ3α, in which a codon optimized α-factor signal sequence was inserted. We devised a work-flow based on the detection of the L1 protein by dot blot, colony blot, and western blot to classify the positive clones. Finally, intracellular HPV VLPs assembly was demonstrated for the first time in yeast cells. This study opens up perspectives for the establishment of an innovative platform for the production of HPV VLPs or other viral antigens for vaccination purposes, based on constitutive expression in P. pastoris.

1. Introduction

HPVs are a large family of dsDNA viruses that cause benign warts and malignant tumors. Persistent infection by HPV imposes a huge burden on health services worldwide owing to its links with cancer of the vagina, vulva, penis, anus, tongue, and, in particular, uterine cervix, which is the most serious outcome [1]. About 75% of sexually active people are exposed to HPV during their lifetime [2]. Some of the nearly 120 HPV genotypes reported [3] are encountered in virtually 100% of cervical tumors and can thus be classified as high-risk HPV (hr-HPV) types [4]. Nearly 1.4 million women are affected by cervical cancer all over the world while 520,000 new cases and 274,000 resulting deaths are reported annually, which leads to a mortality rate of 55% [5]. Although HPV16 and HPV18 are responsible for 70% of cervical cancer cases worldwide [5], there are other 12 hr-HPV types whose prevalence is subject to regional variations [6]. In Brazil, HPV16 is the most common genotype, but HPV31 and HPV33 are as prevalent as HPV18, at least in the Northeast and Midwest Regions [7], which illustrates the urgent need to set up vaccination programmes where HPV is prevalent. Apart from the cervical intraepithelial lesions of all grades and warts, it is estimated that 5% of all human cancers are associated with this viral infection [8].

Middle-income developing countries, where more than 80% of the related deaths are found, have failed to establish cervical screening programs in a satisfactory manner [5]. Since 2008, two protective vaccines have been licensed for prophylaxis against HPV infection. Gardasil (Merck) and Cervarix (GlaxoSmithKline) contain HPV VLPs produced in Saccharomyces cerevisiae and baculovirus-infected cells, respectively. Although these vaccines are highly effective and safe [9, 10], their prohibitive costs prevent them from being widely available in developing countries [11]. However, the regional production of prophylactic HPV vaccine could overcome the problem of this price barrier by reducing the cost and also filling the current demand and supply gap [12].

Production of HPV VLPs can be achieved through the expression of recombinant major capsid protein L1 in heterologous systems [14, 15]. These particles preserve the conformational epitopes from native virions and are thus able to induce high titers of neutralizing antibodies [14]. Different expression platforms have been explored for producing HPV VLPs with varying degrees of success [14, 1620]. Bacterial expression systems are limited to producing economically significant amounts of recombinant HPV VLPs [20, 21] and, among the eukaryotic systems, yeast cells have the greatest potential because of their high expression levels, combined with simple growth requirements and high growth rates.

The expression and characterization of HPV VLPs from the methylotrophic yeast Pichia pastoris has been described elsewhere [12, 2224]. In these studies, the expression of HPV L1 genes was under the control of the promoter from the alcohol oxidase I gene (AOX1), which is tightly regulated at the transcription level. Recombinant protein expression under the control of relies on a preliminary production of yeast biomass through cultivation on glucose/glycerol, followed by induction of protein production in the presence of methanol as the sole carbon source [25]. Despite the success of the AOX1-based system, the use of methanol as an inducer has drawbacks such as its inflammability, toxicity, and biomass generation requirements prior to the induction phase. This means there is the need for longer time-based protocols, a rigid control of methanol levels during the induction phase, and the use of an inducer compound, which is particularly unsuitable when planning an industrial platform [25]. Furthermore, there is evidence that the culture conditions required for induction can compromise the expression levels of other VLPs and this can affect HPV L1 expression [22, 26, 27].

The isolation and molecular characterization of the 3-phosphoglyceratekinase gene (PGK1) from P. pastoris was reported by de Almeida et al. [28]. In yeast, PGK1 encodes a glycolytic enzyme which also acts in the gluconeogenic pathway and may represent 5% of the total cellular protein [29]. Secretion of Bacillus subtilis α-amylase protein was carried out effectively under the control of the constitutive from P. pastoris cells grown in glucose, glycerol, or methanol, whereas cells grown in glucose displayed higher expression levels [28]. Unlike the -based system, biomass generation and protein production occur simultaneously in medium containing glucose or glycerol. Although a constitutive expression is not recommended when the protein of interest is toxic to the yeast cell [26, 30], this is not the case for HPV L1 protein since its expression has been efficiently achieved for approximately 144 hours [31]. These features make the an attractive system for heterologous expression in P. pastoris.

In this study, we explored the development of an innovative heterologous expression system for production of HPV16 L1 protein. For this purpose, the -driven constitutive expression of the L1 protein was investigated, both through intracellular and secretory pathways. In order to select well-expressing yeast clones, we combined the use of dot blot, colony blot, and western blot techniques in a workflow for the detection of the L1 protein. Additionally, evidence that HPV L1 protein self-assembles into VLPs was observed in vivo by transmission electron microscopy. To date, this is the first report of heterologous expression in P. pastoris which uses the for biopharmaceutical purposes.

2. Materials and Methods

2.1. Strains and Cell Culture Media

Escherichia coli DH5α strain [F Φ80lacZΔM15 Δ(lacZYA- argF)U169 recA1 endA1 hsdR17(rk−, mK+) phoA supE44 λ- thi-1 gyrA96relA1] was routinely used as a host for cloning and plasmid manipulations. This strain was cultured at 37°C in LB medium (0.5% yeast extract, 1% NaCl, 1% tryptone) supplied with appropriate antibiotics.

The P. pastoris X-33 strain (wild-type) used in this study was purchased from Invitrogen. The yeast cells were grown at 30°C on YPD medium (1% yeast extract, 2% Bacto-peptone, 2% glucose) and YPDS (1% yeast extract, 2% peptone, 2% glucose, 1 M sorbitol) supplemented with 100 μg/mL zeocin (Invitrogen) when necessary.

All the molecular cloning techniques were carried out as previously described [32]. Restriction enzymes used for cloning were purchased from Promega and used in accordance with manufacturer’s recommendations. DNA sequencing analysis was performed on a Genetic Analyser 3500 automatic sequencer (Life Technologies).

2.2. Cloning of the HPV16 L1 and Construction of Expression Vectors

A DNA sequence encoding the HPV16 L1 protein (Gen Bank access number GI: 27752860) was designed with codons optimized for expression in P. pastoris. Restriction sites for XhoI and NotI were added to the flanking regions of the L1 gene so that the cloning could be directed into the expression vector. The gene was synthesized by Epoch Biosciences (TX, USA), and cloned into pBSK plasmid. The resulting construct called pBSK/L1 was amplified in E. coli DH5α. L1 gene was released from pBSK after double-digestion with XhoI and NotI and employed for creating the expression vectors.

Two expression vectors were constructed with the promoter from P. pastoris for constitutive expression of the L1 protein. The original 2 kb sequence described by de Almeida et al. [28] was reduced to a minimal ~400 bp sequence after deletion analysis with restriction enzymes [33]. The resulting sequence was used to generate the pPGKΔ3 expression vector for intracellular expression. Additionally, a pPGKΔ3α expression vector carries a codon-optimized S. cerevisiaeα-factor signal sequence (α-MF) cloned downstream to to drive recombinant protein secretion. Both -based vectors contain the zeocin resistance gene Sh ble for positive selection of E. coli and P. pastoris recombinants, as well as a C-terminal polyhistidine (6xHis) tag for detection of the fusion protein by immunoblot assays. The L1 gene previously digested with XhoI and NotI was cloned into pPGKΔ3α and pPGKΔ3 expression vectors digested with the same enzymes, and the resulting vectors were called pPGKΔ3α/L1 and pPGKΔ3/L1, respectively. The construction of the vectors was confirmed by restriction digestion, PCR and DNA sequencing with specific primers for both L1 (5′ TAGGATCCATGTCATTATGGCTTCCA 3′ and 5′ CTGGATCCTTAATGATGATGATGATGATGCAA 3′ which flank the entire gene while 5′ GGTCAACCTTTAGGAGTTGG 3′ and 5′ GACGAACATTTGTTCCCTTCA 3′ amplify an internal L1 fragment of ~400 bp) and (5′ TCATAGTTCATCCCTCTCTCC 3′) sequences.

2.3. Electroporation of Yeasts and Selection of P. pastoris Recombinant Strains

Stable integration into the PGK1 locus of P. pastoris was achieved after linearization of the 5 μg -based expression vectors with SacI [33]. P. pastoris electrocompetent cells were prepared and transformed, as described elsewhere [13]. In this work, yeast clones were either referred as P. pastoris/pPGKΔ3α/L1 or P. pastoris/pPGKΔ3/L1, depending on the vector that was used.

After selection on agar plates containing YPD supplemented with 100 μg/mL zeocin, the transformants were subjected to a general procedure for the selection of clones containing multiple copies of the expression cassette, called Posttransformational Vector Amplification (PTVA) process [13]. For this purpose, yeast clones were later plated on higher concentrations of zeocin (100, 500, and 1000 μg/mL).

2.4. Screening of Well-Expressing Pichia Clones by Dot Blot and Colony Blot Assays

Multicopy clones resistant to 1000 μg/mL zeocin were subjected to a general screening for selection of recombinant strains expressing high levels of HPV L1 protein. The screening was carried out as follows: (i) P. pastoris/pPGKΔ3α/L1 clones were cultivated in agar plates and subsequently subjected to colony blot for detection of HPV L1 protein with the CamVir anti-HPV16 L1 monoclonal antibody (Chemicon, USA); (ii) In contrast, P. pastoris/pPGKΔ3/L1 clones were subsequently grown in deep-well plates to detect HPV L1 protein by dot blot with the anti-L1 monoclonal antibody.

In the case of colony blot, the protocol described by Goodnough et al. [34] was modified as follows. After cultivation of P. pastoris/pPGKΔ3α/L1 multicopy clones in YPD agar plates for 3 days at 30°C, the PVDF membranes were cut as discs and left standing with the surface colonies for 3 hours at 28°C. Colonies on the master plate could be replicated by placing the PVDF discs on a fresh agar plate when desired. The PVDF discs were washed with tris-buffered saline (TBS) containing 0.05% Tween 20 (TBST) to remove adhering cells. The membranes were blocked by incubation in TBST, supplemented with 5% nonfat milk for 1 hour at room temperature, and then incubated overnight at 4°C with anti-L1 antibody properly diluted (1 : 1000) in the blocking solution. PVDF discs were washed three times with TBST for 10 min and then incubated for 1 hour at room temperature with peroxidase-conjugated goat anti-mouse immunoglobulin (IgG, Sigma-Aldrich) diluted 1 : 3000 in the blocking solution. Chemiluminescence reaction was detected with an ECL kit (GE Healthcare).

For the dot blot assay, P. pastoris/pPGKΔ3/L1 multicopy clones were first grown in a deep-well plate containing YPD medium for 3 days at 30°C. The plate was shaken at 300 rpm and P. pastoris cells were harvested by centrifugation at 3000 rpm for recovery of the pellets. Preparation of yeast extracts was performed with an “alkaline lysis” procedure as previously described [35]. Briefly, the cell pellets were resuspended in lysis buffer (0.1 M NaOH, 0.05 M EDTA, 2% SDS, 2% β-mercaptoethanol) and heated to 90°C for 10 min and the lysate was brought to neutral pH. To improve solubilization, the lysate was heated again for 10 min and mixed with loading buffer (0.25 M Tris-HCl pH 6.8, 50% glycerol). The PVDF membranes were cut in a proper way and inserted into a dot blotter apparatus. Protein transfer to the membranes was carried out with 100 μL of the lysate for 1 hour and, thereafter, the immunoblot proceeded as already described for the colony blot. The HPV16 L1 protein that was episomally expressed in P. pastoris [22] was used as positive control for both dot blot and western blot assays.

2.5. Protein Expression in Shake-Flask Cultures

P. pastoris multicopy clones were selected for baffled-flask cultivation in accordance with the highest detected level for the HPV L1 protein. P. pastoris/pPGKΔ3α/L1 clones were first preinoculated in 5 mL of YPD to achieve the secretion of the L1 protein and grown at 28–30°C in a shaking incubator (250–300 rpm) until the cultures reached an OD600 of ~10 (24 hours). Following this, the cells were inoculated in 20 mL of YPD for 3 days and aliquots were taken for analysis at periodic intervals. These samples were centrifuged at 12000 g for 2 min and the supernatants were stored for further analysis. For the intracellular expression of the L1 protein, P. pastoris/pPGKΔ3/L1 clones were subjected to the same protocol but the cell pellets were stored instead of the supernatants.

2.6. Preparation of Intra- and Extracellular Protein Extracts

Aliquots of supernatants were submitted to precipitation with trichloroacetic acid (TCA) (Sigma-Aldrich) to a final concentration of 10% to allow the secretory production of the HPV L1 protein to be analyzed. After concentration, the supernatant was discarded, and the protein pellet was resuspended again in 100% acetone to remove residual TCA. A final volume of SDS-loading buffer (1 M Tris-HCl, pH 6.8, 10% SDS, 0.5% β-mercaptoethanol, 0.1% bromophenol blue) was then added to the washed pellet (corresponding to 100x concentration) and this mix was resolved on 15% SDS PAGE after the samples had been heated for 10 min at 75°C. Polyacrylamide gel was either stained with Coomassie brilliant blue (Pierce, IL, USA) or transferred to PVDF membranes using a V20-SDB semidry protein transfer apparatus (Scie-plas, Cambridge, UK). Immunoblot was performed as described in Section 2.4.

Preparation of cell extracts for intracellular analysis of the L1 expression was carried out with breaking buffer and acid-washed sterile glass beads (0.45 mm in diameter), according to Cregg et al. [36]. This crude protein sample was mixed in gel loading buffer and prepared for SDS PAGE and western blot (as described above).

2.7. Electron Microscopy

At the end of the induction course, both the cells and culture supernatants were subjected to absorption into carbon-coated grids, as recommended by Falcón et al. [37]. The grids were subjected to examination with a FEI Morgani 268D transmission electron microscope, operated at 100 kV, in order to analyze the VLP formation in cytoplasm and culture medium of recombinant yeast-expressing HPV L1 protein.

3. Results and Discussion

3.1. Construction of Expression Vectors and Generation of Pichia Recombinant Strains

For the production of HPV16 L1 protein, we used a heterologous expression system based on the constitutive P. pastoris PGK1 promoter which was originally described and employed for secretion of α-amylase from Bacillus subtilis [28]. In this work, a variant of the PGK1 promoter sequence containing ~400 bp was used to allow integration of the expression vector via homologous recombination, as well as a codon-optimized α-factor from S. cerevisiae to drive the secretion of recombinant proteins (Figures 1(a) and 1(c)). Since previous studies have analyzed different protocols to optimize VLP production and purification steps in yeast [3841], we believe that secretion of HPV L1 in the culture media could assist downstream processing. The analysis by PCR, DNA sequencing (data not shown), and restriction digestion showed the successful cloning of a codon-optimized L1 gene into -based vectors (Figure 1(b), left panel). P. pastoris/pPGKΔ3α-L1H16 and P. pastoris/pPGKΔ3-L1H16 recombinant strains were obtained after electroporation of yeast cells with the linearized expression cassettes (Figure 1(b), right panel) and further selection on agar plates containing zeocin.

Although recombination with the expression cassette confers zeocin-resistance to P. pastoris cells, there is no way to ensure that a heterologous gene will be expressed at high levels. The selection of clones containing multiple copies of an expression cassette represents an attractive strategy for increasing expression levels [13]. Multicopy clones can be screened by transformants that are resistant to high levels of a selectable marker compound. However, this effective method is still laborious and inefficient, since 50 to 100 transformants usually need to be screened to have a reasonable chance of finding the 1-2% multicopy (>10 copies) clones [42]. Recently, an iterative process termed Posttransformational Vector Amplification (PTVA) has been investigated to generate P. pastoris clones containing multiple copies of the entire vector in the genome through the submission of transformants, which were initially selected on a low level of drug and only contained one or a few copies of the vector, to higher levels of zeocin [13]. Molecular details of this process are still unknown, but an analysis of PTVA-selected clones showed a three-to-five-fold increase in the vector copy number, as well as the integration of all the copies into the P. pastoris genome in the same locus as the original copy. In this work, we tested the generation of multicopy clones by the PTVA process starting with 55 transformants from each cassette. After growth on agar plates with increasing zeocin levels, 50 P. pastoris/pPGKΔ3-L1H16 clones and 52 P. pastoris/pPGKΔ3α-L1H16 clones showed resistance to 1000 μg/mL zeocin. Zeocin resistance levels can be directly correlated with the copy numbers of the expression cassette integrated in the genome. The clones that only harbor one copy of the integrated expression cassette are resistant to 100 μg/mL zeocin, while integration of 2, 3, and 4 cassette copies causes resistance of up to 500, 1000, and 2000 μg/mL zeocin [26].

3.2. Well-Expressing Pichia Clones Are Rapidly Screened by Dot and Colony Blot

Compared with E. coli-based expression systems, the main disadvantage of P. pastoris is that it relies on the heterogeneous expression levels of the exogenous gene when the primary transformants are being analyzed [43]. Multicopy screening has the potential to enhance strains expressing increased levels of the heterologous gene, but only a small portion (5%) of highly drug-resistant colonies are generated as a result of an increased gene dosage. Most transformants are resistant to drugs for other (unknown) reasons [13]. Hence, we established a workflow based on the cultivation of recombinant yeasts in deep-well and agar plates and carried out a further analysis by dot and colony blot to identify well-expressing clones. Through this general approach, we were able to access the expression levels of 52 pPGKΔ3α/L1H16 colonies and 25 pPGKΔ3/L1H16 colonies. The multicopy clones generated by the PTVA process displayed a uniform expression signal (Figures 2(a) and 2(b)). The lack of detection by the P. pastoris cells that had been transformed by the parental expression vectors (empty PGK-based vectors) together with the detection of the L1 protein expressed episomally in P. pastoris cytosol ensured the specificity of the reaction.

It is worth noting that this practical and rapid workflow provides a strategy to screen well-expressing clones through cultivation under nonoptimal conditions—with regard to culture volume, shaking, and aeration, as is the case for deep-well and agar plate cultures—among a considerable high number of colonies. The colony blot assay has an important feature, particularly in the case of PGK-based clones that secrete L1 protein, which is the dispensable use of liquid media. Since P. pastoris secretes few proteins into the medium [25, 30, 43], screening strategies based on cultivation in liquid media may be unsuitable and require protein precipitation, for example, which is not the case here.

3.3. HPV16 L1 Expression in Shake Flasks under PGK1 Regulation

Expression of the major capsid protein of HPV16 in P. pastoris was first reported by Bazan et al. [22]. According to these authors, the expression level achieved was higher than that obtained in S. cerevisiae. Despite being innovative and important means of demonstrating the feasibility of Pichia in producing HPV VLPs, the work carried out by Bazan and colleagues, employed a nonintegrative system. As the authors (and other studies) point out, the use of episomal plasmids is not recommended for industrial purposes, since they have been associated with the generation of recombinant strains that are genetically unstable and have two undesirable outcomes: (i) instability in the heterologous expression levels; (ii) continuous antibiotic selection which is needed to maintain the expression plasmids [25, 26, 44]. Heterologous L1 protein from other HPV genotypes was also reported in P. pastoris by employing AOX1-based integrative vectors [12, 23, 24].

With regard to the metabolization of methanol, P. pastoris strains present three distinct phenotypes: (i) the wild-type phenotype designated as methanol utilization plus (Mut+) and characterized by the presence of a functional copy of the alcohol oxidase 1 gene (AOX1) which is responsible for 85% of the utilization of methanol by the alcohol oxidase enzyme; (ii) methanol utilization slow () phenotype, characterized by the absence of the AOX1 gene and presence of the AOX2 gene, which is about 97% homologous to AOX1 but much less expressed; (iii) methanol utilization minus (Mut) phenotype, where both AOX genes are absent. Hence, while strains show a poor growth on methanol medium, the Mut+ strains have a greater growth rate and Mut strains, in contrast, are unable to grow on methanol as the sole carbon source. Interestingly, Cregg et al. [27] showed that P. pastoris Mut+ strains expressed 10-fold less HBsAg than strains, which suggests that consumption of methanol at high levels, coupled with a rapid growth rate, may not lead to efficient HBsAg assembly [26]. In addition, HPV VLPs expressed under AOX1 regulation were described as unstable and inadequately assembled [22], although these features were reversed after the incubation of the VLPs under refolding conditions. In light of this, these findings suggest that cell requirements during induction are nonoptimal for the production of HBV and HPV VLPs. Finally, even though recombinant protein expression in Pichia strain could circumvent the deficiencies observed for the generation of VLPs in Mut+ strains, the slower methanol utilization phenotype requires long fermentation times to reach peak product concentrations. Once induced, the entire culture cannot be used to start a new culture [26].

In contrast with the reports employing -based system, we constitutively expressed the L1 protein through in the presence of glucose and by employing an easier cultivation/expression schedule in shake flasks, since L1 expression occurred together with the cell growth and the laborious control of the methanol/inducer levels was dispensable (Figures 3(a) and 3(b)). By using the anti-HPV16 L1 monoclonal antibody, it was demonstrated that a 56 kDa protein was present in the cellular lysate during the cultivation course (Figure 3(b), L1 secretion will be further discussed), while no detection was observed in the control extracts. A continuous culture strategy, which is a cost-effective method for large-scale production, could be achieved through the use of -driven expression and would be attractive as it allows an indefinite theoretical production of the heterologous protein [26]. Although there have been a number of different reports showing genetic instability in P. pastoris multicopy strains induced with methanol [4547], we have not observed the same results with the PGK-based clones explored in our work. HPV L1 has been successively detected by western blot after approximately 90 generations, even in the absence of zeocin (Figure 3(b), lower panel). Although more investigations need to be carried out with regard to the structural stability of these clones, these preliminary data suggest there is another advantage related to the use of the P. pastoris PGK1 promoter.

It has been argued that creating optimum conditions for the production and purification of HPV VLPs is a strategy that can reduce the production costs of vaccines [31, 40], since it could require less time and labor in industrial production. In this regard, different procedures have been explored related to VLP purification steps, such as ultracentrifugation, size-exclusion chromatography, and cation-exchange chromatography or even their combination [3941], as well as the findings about how cell culture conditions can be optimized [31, 38]. We believe that secretion of HPV L1 in the culture media could improve the downstream process. Yeasts such as S. cerevisiae and P. pastoris have low specificity requirements for signal sequence recognition [25]. The well characterized S. cerevisiae α-MF is the most used secretion signal for P. pastoris and achieves similar and even higher expression levels than the Pichia native signal sequence [30, 48]. In attempting to obtain secretion of L1 protein at high levels in the culture medium, we employed a codon-optimized α-MF along with the PGK1-based vectors. Our initial attempts to detect HPV L1 protein in supernatant of P. pastoris/pPGKΔ3α/L1H16 clones showed an unexpected protein smear when the samples were boiled at 95°C, which was not visualized in the extract of negative controls (Figure 3(a)). A similar observation was reported earlier [12], probably due to multimerization of L1 protein in higher structures upon boiling. Although this feature was not pronounced when the cell lysate was analyzed, we proceeded with the protein denaturation at 75°C for all the samples before fractioning in electrophoresis, and this allowed the detection of the L1 protein in its expected molecular weight (56 kDa, Figures 3(a) and 3(b)). Lower bands observed in both media and cell lysate-derived samples are possibly degradation products of the L1 protein, since these species were not seen in the negative controls. Similar degradation patterns were also reported previously [12, 24]. When the identical electrophoretic pattern displayed by the secreted L1 protein was compared with both its nonsecreted L1 version and the L1 episomally expressed version, it was suggested the α-MF was being processed correctly. In addition, this indicates the lack of posttranslational modification in the secreted L1 protein, although previous reports had characterized glycosylation sites in the HPV1n6 L1 protein [49, 50]. More detailed investigations are needed in this area.

3.4. Electron Microscopy Evidence of HPV VLP Assembling within the P. pastoris Cells but Not in the Culture Media

The assembly of HBV and HCV core proteins into VLPs has been previously reported in yeast [37, 51]. However, no clear evidence has so far been provided to demonstrate that the HPV VLP self-assembled inside the yeast cell. Electron microscopic characterizations of VLP formation were achieved after downstream processing and purification from the yeast cell lysate, which is also true for the VLPs employed in the current HPV vaccines. The demonstration of intracellular VLP formation in P. pastoris opens up perspectives for the development of a live attenuated vaccine, since this yeast has been granted the GRAS (Generally Recognized as Safe) status by the FDA (Food and Drug Administration) and has been recognized as an efficient vehicle for the delivery of viral antigens when administered by an oral and intramuscular route [52]. Furthermore, immunization of animals with live bacteria strains expressing HPV VLP has proved to be effective in the anti-L1 IgG production [20].

Electron microscopy analysis of P. pastoris recombinant strains described here provides evidence of electrodense structures with estimated diameters of 55 nm, as expected for the HPV VLPs (Figures 4(a)4(f)) and in accordance with the western blot analysis that shows the presence of the L1 protein. These particles were located near the endoplasmic reticulum membranes (Figures 4(a) and 4(b)) and inside the autophagic bodies (Figures 4(d) and 4(e)) (either free or apparently interacting with cellular membranes); however, they were absent from the cytoplasm of P. pastoris strains that had been transformed by the parental vectors (Figure 4(h)). We also searched for circular, electron dense cellular structures in the cytosol and likewise clustered on membranes which could be mistaken for VLPs. The structures highlighted in Figure 4(g) were identified as ribosomes mainly owing to their small diameter (~20 nm) and differential disposition when attached to membranes and concomitant presence in cells transformed with empty vectors. An immunocytochemical analysis was conducted with a view to providing a further characterization of VLPs within the yeast cells. However, the VLP detection was not possible by means of the CamVir antibody, which is often used to detect HPV16 capsomeres and VLPs [41, 53]. Previous attempts to detect intracellular HCV VLPs in P. pastoris through immunoelectron microscopy were hindered by the retention of cell membrane components in the architecture of the HCV core particles which has an envelope-like structure [37]. According to the authors, neither the anti-HCV core monoclonal antibody nor the core-reacting human sera were able to stain the particles, in spite of their visualization by conventional electron microscopy. This data could explain why we could not detect the HPV VLPs.

We attempted to characterize assembled HPV VLPs in the culture media from P. pastoris recombinant strains. It has been shown that assembly of HPV VLPs can be achieved with neutral pH, high ionic strength, and relatively low concentrations of reducing agents [54]. Conversely, high pH, low salt concentration, and the presence of reducing agents disassemble the VLP into capsomeres. As P. pastoris growth progresses in unbuffered medium, the pH drops to 3 or below [55]. It can be speculated that under this condition, culture media offers nonoptimal conditions for HPV VLPs assembly, since HPV L1 protein was detected by western blot after concentration. Nevertheless, the absence of VLP assembly under our experimental conditions does not compromise the use of L1 secreted protein as immunogens. Particle assembly protocols have been used for HPV VLP formation even when the L1 protein is expressed intracellularly, either to increase production yields or improve particle immunogenicity [22, 4851]. Since our main objective was to evaluate the feasibility of the system, we believe that dot blot, colony blot, and western blot data ensure that our goal can be achieved.

4. Conclusion

The data presented in this work demonstrate the functionality of a biotechnology platform based on P. pastoris PGK1 promoter for the production of HPV16 VLPs. Constitutive expression of the HPV16 L1 capsid protein was efficiently achieved for the first time through an easier production schedule than is the case when an AOX1 inducible promoter is employed. In addition, an optimized α-MF secretion signal downstream to provided a prompt secretion of L1 protein in the culture media. Although further experiments are needed to determine which production strategy is more effective for HPV L1 protein production, the data outlined here underline the efficiency of a PGK1-based platform as a heterologous expression system and support its employment for the production of HPV VLPs for vaccination purposes. Moreover, our preliminary data showing intracellular VLP assembly open up perspectives for the employment of P. pastoris cells that can express HPV L1 protein as a live attenuated vaccine. To the best of our knowledge, this is the first time that the expression of HPV L1 protein was achieved in P. pastoris through an IP-free biotechnology platform. The discovery of alternatives to biotechnology platforms for producing an efficient and cost-effective vaccine has the potential both to offer greater protection—since not all the HPV genotypes are covered by the current vaccines—and to allow the vaccine to be widely disseminated.

Conflict of Interests

The authors declare that there is no conflict of interests regarding the publication of this paper.


The authors would like to thank Dr. Osvaldo Pompílio de Melo Neto and Dr. Christian Reis (Department of Microbiology, FIOCRUZ/Aggeu Magalhães Research Center, Pernambuco, Brazil) for their valuable support during the immunodetection studies; Dr. Janaína Viana Melo (Laboratory of Microscopy and Microanalysis, CETENE, Pernambuco, Brazil) for her assistance during the transmission electron microscopy analysis; and Dr. Marcos Antonio Morais Junior (Laboratory of Genetics of Microorganisms, Federal University of Pernambuco, Brazil) for technical suggestions during the experiments. The authors are also grateful to Dr. Paulo Lee Ho (Biotechnology Centre, Instituto Butantan, São Paulo, Brazil) for his helpful critical comments and suggestions, as well as for providing the HPV16 L1 protein produced in P. pastoris cells and the Platform of Sequencing-LABCEN/CCB in the UFPE for allowing them to use its facilities. This work was supported by CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico), CAPES (Coordenação de Aperfeiçoamento de Pessoal de Nível Superior), and FACEPE (Fundação de Amparo à Ciência e Tecnologia do Estado de Pernambuco), and PPSUS (Programa de Pesquisa do Sistema único de Saúde).


  1. M. A. Stanley, “Genital human papillomavirus infections: current and prospective therapies,” Journal of General Virology, vol. 93, no. 4, pp. 681–691, 2012. View at: Publisher Site | Google Scholar
  2. L. A. Koutsky, D. A. Galloway, and K. K. Holmes, “Epidemiology of genital human papillomavirus infection,” Epidemiologic Reviews, vol. 10, pp. 122–163, 1988. View at: Google Scholar
  3. H.-U. Bernard, R. D. Burk, Z. Chen, K. van Doorslaer, H. Z. Hausen, and E.-M. de Villiers, “Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments,” Virology, vol. 401, no. 1, pp. 70–79, 2010. View at: Publisher Site | Google Scholar
  4. J. M. M. Walboomers, M. V. Jacobs, M. M. Manos et al., “Human papillomavirus is a necessary cause of invasive cervical cancer worldwide,” The Journal of Pathology, vol. 189, no. 1, pp. 12–19, 1999. View at: Publisher Site | Google Scholar
  5. A. C. de Freitas, A. P. A. D. Gurgel, B. S. Chagas, E. C. Coimbra, and C. M. M. do Amaral, “Susceptibility to cervical cancer: an overview,” Gynecologic Oncology, vol. 126, no. 2, pp. 304–311, 2012. View at: Publisher Site | Google Scholar
  6. N. Muñoz, F. X. Bosch, S. De Sanjosé et al., “Epidemiologic classification of human papillomavirus types associated with cervical cancer,” The New England Journal of Medicine, vol. 348, no. 6, pp. 518–527, 2003. View at: Publisher Site | Google Scholar
  7. M. F. B. da Silva, B. S. Chagas, V. Guimarães et al., “HPV31 and HPV33 incidence in cervical samples from women in Recife, Brazil,” Genetics and Molecular Research, vol. 8, no. 4, pp. 1437–1443, 2009. View at: Publisher Site | Google Scholar
  8. C. de Martel, J. Ferlay, S. Franceschi et al., “Global burden of cancers attributable to infections in 2008: a review and synthetic analysis,” The Lancet Oncology, vol. 13, no. 6, pp. 607–615, 2012. View at: Publisher Site | Google Scholar
  9. D. M. Harper, E. L. Franco, C. M. Wheeler et al., “Sustained efficacy up to 4·5 years of a bivalent L1 virus-like particle vaccine against human papillomavirus types 16 and 18: follow-up from a randomised control trial,” The Lancet, vol. 367, no. 9518, pp. 1247–1255, 2006. View at: Publisher Site | Google Scholar
  10. L. L. Villa, R. L. R. Costa, C. A. Petta et al., “High sustained efficacy of a prophylactic quadrivalent human papillomavirus types 6/11/16/18 L1 virus-like particle vaccine through 5 years of follow-up,” British Journal of Cancer, vol. 95, no. 11, pp. 1459–1466, 2006. View at: Publisher Site | Google Scholar
  11. A. A. Hakim and T. A. Dinh, “Worldwide impact of the human papillomavirus vaccine,” Current Treatment Options in Oncology, vol. 10, no. 1-2, pp. 44–53, 2009. View at: Publisher Site | Google Scholar
  12. N. Hanumantha Rao, P. Baji Babu, L. Rajendra et al., “Expression of codon optimized major capsid protein (L1) of human papillomavirus type 16 and 18 in Pichia pastoris; purification and characterization of the virus-like particles,” Vaccine, vol. 29, no. 43, pp. 7326–7334, 2011. View at: Publisher Site | Google Scholar
  13. A. J. Sunga, I. Tolstorukov, and J. M. Cregg, “Posttransformational vector amplification in the yeast Pichia pastoris,” FEMS Yeast Research, vol. 8, no. 6, pp. 870–876, 2008. View at: Publisher Site | Google Scholar
  14. R. Kirnbauer, F. Booy, N. Cheng, D. R. Lowy, and J. T. Schiller, “Papillomavirus L1 major capsid protein self-assembles into virus-like particles that are highly immunogenic,” Proceedings of the National Academy of Sciences of the United States of America, vol. 89, no. 24, pp. 12180–12184, 1992. View at: Publisher Site | Google Scholar
  15. M. S. Campo and R. B. S. Roden, “Papillomavirus prophylactic vaccines: established successes, new approaches,” Journal of Virology, vol. 84, no. 3, pp. 1214–1220, 2010. View at: Publisher Site | Google Scholar
  16. C. S. McLean, M. J. Churcher, J. Meinke et al., “Production and characterisation of a monoclonal antibody to human papillomavirus type 16 using recombinant vaccinia virus,” Journal of Clinical Pathology, vol. 43, no. 6, pp. 488–492, 1990. View at: Publisher Site | Google Scholar
  17. R. Kirnbauer, J. Taub, H. Greenstone et al., “Efficient self-assembly of human papillomavirus type 16 L1 and L1-L2 into virus-like particles,” Journal of Virology, vol. 67, no. 12, pp. 6929–6936, 1993. View at: Google Scholar
  18. X. S. Chen, G. Casini, S. C. Harrison, and R. L. Garcea, “Papillomavirus capsid protein expression in Escherichia coli: purification and assembly of HPV11 and HPV16 L1,” Journal of Molecular Biology, vol. 307, no. 1, pp. 173–182, 2001. View at: Publisher Site | Google Scholar
  19. A. Varsani, A. L. Williamson, R. C. Rose, M. Jaffer, and E. P. Rybicki, “Expression of Human papillomavirus type 16 major capsid protein in transgenic Nicotiana tabacum cv. Xanthi,” Archives of Virology, vol. 148, no. 9, pp. 1771–1786, 2003. View at: Publisher Site | Google Scholar
  20. K. A. Aires, A. M. Cianciarullo, S. M. Carneiro et al., “Production of human papillomavirus type 16 L1 virus-like particles by recombinant Lactobacillus caseicells,” Applied and Environmental Microbiology, vol. 72, no. 1, pp. 745–752, 2006. View at: Publisher Site | Google Scholar
  21. W. B. Lai and A. P. J. Middelberg, “The production of human papillomavirus type 16 L1 vaccine product from Escherichia coli inclusion bodies,” Bioprocess and Biosystems Engineering, vol. 25, no. 2, pp. 121–128, 2002. View at: Publisher Site | Google Scholar
  22. S. B. Bazan, A. de Alencar Muniz Chaves, K. A. Aires, A. M. Cianciarullo, R. L. Garcea, and P. L. Ho, “Expression and characterization of HPV-16 L1 capsid protein in Pichia pastoris,” Archives of Virology, vol. 154, no. 10, pp. 1609–1617, 2009. View at: Publisher Site | Google Scholar
  23. E. C. Coimbra, F. B. Gomes, J. F. Campos et al., “Production of L1 protein from different types of HPV in Pichia pastoris using an integrative vector,” Brazilian Journal of Medical and Biological Research, vol. 44, no. 12, pp. 1209–1214, 2011. View at: Publisher Site | Google Scholar
  24. Z. Jiang, G. Tong, B. Cai, Y. Xu, and J. Lou, “Purification and immunogenicity study of human papillomavirus 58 virus-like particles expressed in Pichia pastoris,” Protein Expression and Purification, vol. 80, no. 2, pp. 203–210, 2011. View at: Publisher Site | Google Scholar
  25. R. Daly and M. T. W. Hearn, “Expression of heterologous proteins in Pichia pastoris: a useful experimental tool in protein engineenring and production,” Journal of Molecular Recognition, vol. 18, no. 2, pp. 119–138, 2005. View at: Publisher Site | Google Scholar
  26. A. Vassileva, D. A. Chugh, S. Swaminathan, and N. Khanna, “Expression of hepatitis B surface antigen in the methylotrophic yeast Pichia pastoris using the GAP promoter,” Journal of Biotechnology, vol. 88, no. 1, pp. 21–35, 2001. View at: Publisher Site | Google Scholar
  27. J. M. Cregg, J. F. Tschopp, C. Stillman et al., “High-level expression and efficient assembly of hepatitis B surface antigen in the methylotrophic yeast, Pichia pastoris,” Nature Biotechnology, vol. 5, no. 5, pp. 479–485, 1987. View at: Publisher Site | Google Scholar
  28. J. R. M. de Almeida, L. M. P. de Moraes, and F. A. G. Torres, “Molecular characterization of the 3-phosphoglycerate kinase gene (PGK1) from the methylotrophic yeast Pichia pastoris,” Yeast, vol. 22, no. 9, pp. 725–737, 2005. View at: Publisher Site | Google Scholar
  29. M. J. Holland and J. P. Holland, “Isolation and identification of yeast messenger ribonucleic acids coding for enolase, glyceraldehyde-3-phosphate dehydrogenase, and phosphoglycerate kinase,” Biochemistry, vol. 17, no. 23, pp. 4900–4907, 1978. View at: Publisher Site | Google Scholar
  30. S. Macauley-Patrick, M. L. Fazenda, B. McNeil, and L. M. Harvey, “Heterologous protein production using the Pichia pastoris expression system,” Yeast, vol. 22, no. 4, pp. 249–270, 2005. View at: Publisher Site | Google Scholar
  31. H. J. Kim, H.-L. Kwag, Y. Jin, and H.-J. Kim, “The composition of the carbon source and the time of cell harvest are critical determinants of the final yield of human papillomavirus type 16 L1 protein produced in Saccharomyces cerevisiae,” Protein Expression and Purification, vol. 80, no. 1, pp. 52–60, 2011. View at: Publisher Site | Google Scholar
  32. J. Sambrook and D. W. Russell, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, New York, NY, USA, 3rd edition, 2001.
  33. A. Arruda, Utilização do promotor do gene PGK1 de Pichia pastoris para expressão heteróloga [M.S. thesis], Universidade de Brasília, Brasília, Brazil, 2008.
  34. M. C. Goodnough, B. Hammer, H. Sugiyama, and E. A. Johnson, “Colony immunoblot assay of botulinal toxin,” Applied and Environmental Microbiology, vol. 59, no. 7, pp. 2339–2342, 1993. View at: Google Scholar
  35. T. von der Haar, “Optimized protein extraction for quantitative proteomics of yeasts,” PLoS ONE, vol. 2, no. 10, Article ID e1078, 2007. View at: Publisher Site | Google Scholar
  36. J. M. Cregg, I. Tolstorukov, A. Kusari, J. Sunga, K. Madden, and T. Chappell, “Expression in the yeast Pichia pastoris,” Methods in Enzymology, vol. 463, pp. 169–189, 2009. View at: Publisher Site | Google Scholar
  37. V. Falcón, C. García, M. C. de la Rosa, I. Menéndez, J. Seoane, and J. M. Grillo, “Ultrastructural and immunocytochemical evidences of core-particle formation in the methylotrophic Pichia pastoris yeast when expressing HCV structural proteins (core-E1),” Tissue & Cell, vol. 31, no. 2, pp. 117–125, 1999. View at: Publisher Site | Google Scholar
  38. M.-A. Park, H. J. Kim, and H.-J. Kim, “Optimum conditions for production and purification of human papillomavirus type 16 L1 protein from Saccharomyces cerevisiae,” Protein Expression and Purification, vol. 59, no. 1, pp. 175–181, 2008. View at: Publisher Site | Google Scholar
  39. H. J. Kim, S. J. Lim, J. Y. Kim, S. Y. Kim, and H.-J. Kim, “A method for removing contaminating protein during purification of human papillomavirus type 18 L1 protein from Saccharomyces cerevisiae,” Archives of Pharmacal Research, vol. 32, no. 12, pp. 1759–1766, 2009. View at: Publisher Site | Google Scholar
  40. H. J. Kim, S. Y. Kim, S. J. Lim, J. Y. Kim, S. J. Lee, and H.-J. Kim, “One-step chromatographic purification of human papillomavirus type 16 L1 protein from Saccharomyces cerevisiae,” Protein Expression and Purification, vol. 70, no. 1, pp. 68–74, 2010. View at: Publisher Site | Google Scholar
  41. H. J. Kim, S. J. Lim, H.-L. Kwag, and H.-J. Kim, “The choice of resin-bound ligand affects the structure and immunogenicity of column-purified human papillomavirus type 16 virus-like particles,” PLoS ONE, vol. 7, no. 4, Article ID e35893, 2012. View at: Publisher Site | Google Scholar
  42. M. Romanos, C. Scorer, K. Sreekrishna, and J. Clare, “The generation of multicopy recombinant strains,” Methods in Molecular Biology, vol. 103, pp. 55–72, 1998. View at: Google Scholar
  43. J. L. Cereghino and J. M. Cregg, “Heterologous protein expression in the methylotrophic yeast Pichia pastoris,” FEMS Microbiology Reviews, vol. 24, no. 1, pp. 45–66, 2000. View at: Publisher Site | Google Scholar
  44. M. A. Romanos, C. A. Scorer, and J. J. Clare, “Foreign gene expression in yeast: a review,” Yeast, vol. 8, no. 6, pp. 423–488, 1992. View at: Publisher Site | Google Scholar
  45. H. Ohi, N. Okazaki, S. Uno, M. Miura, and R. Hiramatsu, “Chromosomal DNA patterns and gene stability of Pichia pastoris,” Yeast, vol. 14, no. 10, pp. 895–903, 1998. View at: Publisher Site | Google Scholar
  46. S. Curvers, J. Linnemann, T. Klauser, C. Wandrey, and R. Takors, “Recombinant protein production with Pichia pastoris in continuous fermentation—kinetic analysis of growth and product formation,” Chemical Engineering and Technology, vol. 25, no. 8, pp. 229–235, 2002. View at: Google Scholar
  47. T. Zhu, M. Guo, C. Sun et al., “A systematical investigation on the genetic stability of multi-copy Pichia pastoris strains,” Biotechnology Letters, vol. 31, no. 5, pp. 679–684, 2009. View at: Publisher Site | Google Scholar
  48. R. J. M. Raemaekers, L. de Muro, J. A. Gatehouse, and A. P. Fordham-Skelton, “Functional phytohemagglutinin (PHA) and Galanthus nivalis agglutinin (GNA) expressed in Pichia pastoris correct N-terminal processing and secretion of heterologous proteins expressed using the PHA-E signal peptide,” European Journal of Biochemistry, vol. 265, no. 1, pp. 394–403, 1999. View at: Google Scholar
  49. H. M. Browne, M. J. Churcher, M. A. Stanley, G. L. Smith, and A. C. Minson, “Analysis of the L1 gene product of human papillomavirus type 16 by expression in a vaccinia virus recombinant,” Journal of General Virology, vol. 69, no. 6, pp. 1263–1273, 1988. View at: Publisher Site | Google Scholar
  50. J. Zhou and I. H. Frazer, “Glycosylation of human papillomavirus type 16 L1 protein,” Virology, vol. 194, no. 1, pp. 210–218, 1993. View at: Publisher Site | Google Scholar
  51. M. Yamaguchi, Y. Miyatsu, Y. Horikawa et al., “Dynamics of hepatitis B virus core antigen in a transformed yeast cell: analysis with an inducible system,” Journal of Electron Microscopy, vol. 43, no. 6, pp. 386–393, 1994. View at: Google Scholar
  52. O. Taghavian, H. Spiegel, R. Hauck, H. M. Hafez, R. Fischer, and S. Schillberg, “Protective oral vaccination against Infectious bursal disease virus using the major viral antigenic protein VP2 produced in Pichia pastoris,” PLoS ONE, vol. 8, no. 12, Article ID e83210, 2013. View at: Publisher Site | Google Scholar
  53. N. Thönes, A. Herreiner, L. Schädlich, K. Piuko, and M. Müller, “A direct comparison of human papillomavirus type 16 L1 particles reveals a lower immunogenicity of capsomeres than virus-like particles with respect to the induced antibody response,” Journal of Virology, vol. 82, no. 11, pp. 5472–5485, 2008. View at: Publisher Site | Google Scholar
  54. Q. Zhao, Y. Modis, K. High et al., “Disassembly and reassembly of human papillomavirus virus-like particles produces more virion-like antibody reactivity,” Virology Journal, vol. 9, article 52, 2012. View at: Publisher Site | Google Scholar
  55. R. A. Brierley, G. R. Davis, and G. C. Holtz, “Production of insulin-like growth factor-1 in methylotrophic yeast cells,” United States Patent 5,32 4,639, 1994. View at: Google Scholar

Copyright © 2015 F. C. Mariz et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

More related articles

 PDF Download Citation Citation
 Download other formatsMore
 Order printed copiesOrder

Related articles

We are committed to sharing findings related to COVID-19 as quickly as possible. We will be providing unlimited waivers of publication charges for accepted research articles as well as case reports and case series related to COVID-19. Review articles are excluded from this waiver policy. Sign up here as a reviewer to help fast-track new submissions.