Research Article
The Impact of Normalization Methods on RNA-Seq Data Analysis
Table 3
Rank of the bias values obtained using five normalization methods and RD for the normalization of the three tested data sets.
| | Normalization method | Cheung data set rank (bias value) | Bodymap data set rank (bias value) | AML data set rank (bias value) |
| | TMM | 3.5 (0.890) | 4 (1.123) | 6 (0.587) | | UQ | 3.5 (0.890) | 5 (1.139) | 4 (0.564) | | DES | 1 (0.885) | 2 (1.102) | 1 (0.512) | | EBS | 2 (0.887) | 3 (1.111) | 3 (0.532) | | PS | 5 (0.893) | 1 (1.098) | 2 (0.523) | | RD | 6 (0.908) | 6 (1.159) | 5 (0.581) |
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