Research Article
The Impact of Normalization Methods on RNA-Seq Data Analysis
Table 4
Rank of the variance values obtained using the five normalization methods and RD for the normalization of the three tested data sets.
| | Normalization method | Cheung data set rank (variance value) | Bodymap data set rank (variance value) | AML data set rank (variance value) |
| | TMM | 4 (0.779) | 4 (1.305) | 6 (0.364) | | UQ | 3 (0.778) | 5 (1.330) | 4 (0.335) | | DES | 1 (0.768) | 2 (1.270) | 1 (0.283) | | EBS | 2 (0.771) | 3 (1.283) | 3 (0.300) | | PS | 5 (0.782) | 1 (1.268) | 2 (0.291) | | RD | 6 (0.812) | 6 (1.390) | 5 (0.355) |
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