Research Article

The Impact of Normalization Methods on RNA-Seq Data Analysis

Table 6

Performances of the normalization methods with informative genes based on five classifiers and LOOCV applied to the Cheung, Bodymap, and AML data sets. The first number in each cell denotes the percentage of the average of five prediction errors from five different classification methods. The second number in each cell that is in brackets is the percentage of the median of the five prediction errors.

ā€‰TMMUQDESEBSPSRD

Cheung11.110.74.54.43.911.6
(9.8)(7.3)(0.4)(0.0)(0.0)(12.2)

Bodymap16.216.216.015.816.016.2
(18.8)(18.8)(17.7)(16.7)(17.7)(18.8)

AML8.18.07.77.47.38.3
(7.4)(7.4)(7.4)(7.4)(7.4)(7.4)