Amino Acids in Nine Ligand-Prefer Ramachandran Regions

Figure 7

An example of the ligand site prediction performance of Ligsite-csc and our method (pdbid: 2f48). The top-scoring binding site predicted by Ligsite-csc is denoted by a blue sphere, four additional binding sites listed in top five score grids predicted by Ligsite-csc are denoted by light blue spheres, and the site predicted by our method is denoted by a red sphere. The protein surface is depicted in grey, and the ligand is shown as a purple stick. The angles for four ligand-prefer Ramachandran boxes residues around the red sphere are indicated in bold font.