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BioMed Research International
Volume 2015 (2015), Article ID 769471, 12 pages
http://dx.doi.org/10.1155/2015/769471
Research Article

Agent-Based Spatiotemporal Simulation of Biomolecular Systems within the Open Source MASON Framework

1Escuela Superior de Ingeniería Informática (ESEI), Edificio Politécnico, Universidad de Vigo, Campus Universitario As Lagoas s/n, 32004 Ourense, Spain
2LEPABE, Department of Chemical Engineering, Faculty of Engineering, University of Porto, Rúa Dr. Roberto Frias, 4200-465 Porto, Portugal
3Centre of Biological Engineering (CEB), University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal

Received 19 August 2014; Accepted 30 October 2014

Academic Editor: Juan F. De Paz

Copyright © 2015 Gael Pérez-Rodríguez et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

Supplementary material provides a live demonstration of the biomolecular simulation of the two-step enzymatic reaction. Video “SimulatorDemo” provides general view of the simulator in action while the video “SimulatorDemo_Zoom” provides a closer look into the continuous two-dimensional space, notably over the behaviour of the smaller molecules.

  1. Supplementary Material