Research Article
Transcriptome Analysis of the Carmine Spider Mite, Tetranychus cinnabarinus (Boisduval, 1867) (Acari: Tetranychidae), and Its Response to β-Sitosterol
Table 4
Summary of simple sequence repeat (SSR) types in the Tetranychus cinnabarinus transcriptome.
| | Repeat motif | Numbera | Percentage (%) | Repeat motif | Numbera | Percentage (%)b |
| | Dinucleotide | | | Tetra-nucleotide | | | | AC/GT | 143 | | AAAC/GTTT | 3 | | | AG/CT | 468 | | AAAG/CTTT | 5 | | | AT/AT | 85 | | AAAT/ATTT | 6 | | | Total | 696 | 30.17% | AAGC/CTTG | 2 | | | Trinucleotide | | | AATC/ATTG | 2 | | | AAC/GTT | 310 | | AATG/ATTC | 2 | | | AAG/CTT | 182 | | ACTC/AGTG | 1 | | | AAT/ATT | 182 | | Total | 21 | 0.91% | | ACC/GGT | 75 | | Pentanucleotide | | | | ACG/CGT | 2 | | AAAAC/GTTTT | 1 | | | ACT/AGT | 8 | | AAGAG/CTCTT | 1 | | | AGC/CTG | 59 | | AATAT/ATATT | 1 | | | AGG/CCT | 48 | | Total | 3 | 0.13% | | ATC/ATG | 715 | | Compound SSR | 4 | 0.17% | | CCG/CGG | 2 | | | | | | Total | 1583 | 68.62% | | | |
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Number of the specified SSRs detected in unigenes.
bThe relative percentage of the specified SSRs among the total SSRs.
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