Clique-Based Clustering of Correlated SNPs in a Gene Can Improve Performance of Gene-Based Multi-Bin Linear Combination Test

Figure 2

Averages of (a) the ratio of number of clusters to number of SNPs, (b) the size of the largest cluster, and (c) the number of singleton clusters in each of 1000 genes for LDSelect and CLQ clustering given a threshold value .

(a) The ratio of number of clusters to number of SNPs

(b) The size of the largest cluster

(c) The number of singleton clusters