Research Article

MicroRNA Promoter Identification in Arabidopsis Using Multiple Histone Markers

Table 1

42 independent predicted miRNA transcription start sites.

IndexmiRNA IDmiRNA nameGenome coordinatesTSS

1MI0000989ath-MIR171bchr1:3961348–3961464(−)3961764–3961864
2MI0005386ath-MIR830chr1:4820355–4820549(−)4820549–4820649
3MI0000218ath-MIR159bchr1:6220646–6220841(+)6220446–6220546
4MI0001005ath-MIR394achr1:7058194–7058310(+)7055994–7056094
5MI0019201ath-MIR5630achr1:12011152–12011223(−)12011523–12011623
6MI0019211ath-MIR5630bchr1:12023526–12023597(−)12023997–12024097
7MI0000193ath-MIR161chr1:17825685–17825857(+)17825485–17825585
8MI0019208ath-MIR5636chr1:18549959–18550036(+)18549659–18549759
9MI0001078ath-MIR406chr1:19430078–19430277(−)19431177–19431277
10MI0019235ath-MIR5652chr1:23412989–23413436(−)23413636–23413736
11MI0000196ath-MIR163chr1:24884066–24884396(+)24883966–24884066
12MI0001425ath-MIR414chr1:25137456–25137563(−)25137763–25137863
13MI0000189ath-MIR159achr1:27713233–27713416(−)27713616–27713716
14MI0015817ath-MIR4228chr1:28889375–28889532(+)28889175–28889275
15MI0005105ath-MIR775chr1:29422452–29422574(+)29422052–29422152
16MI0001013ath-MIR396achr2:4142323–4142473(−)4142673–4142773
17MI0005109ath-MIR779chr2:9560761–9560923(+)9560161–9560261
18MI0020189ath-MIR5995bchr2:10026910–10027050(+)10026310–10026410
19MI0020188ath-MIR5595achr2:10026910–10027050(−)10027050–10027150
20MI0000178ath-MIR156achr2:10676451–10676573(−)10676673–10676773
21MI0000215ath-MIR172achr2:11942914–11943015(−)11943215–11943315
22MI0017889ath-MIR5021chr2:11974711–11974881(−)11975181–11975281
23MI0000201ath-MIR166achr2:19176108–19176277(+)19176008–19176108
24MI0001072ath-MIR403chr2:19415052–19415186(+)19414952–19415052
25MI0000208ath-MIR167achr3:8108072–8108209(+)8107972–8108072
26MI0005383ath-MIR827chr3:22122760–22122936(−)22123036–22123136
27MI0000202ath-MIR166bchr3:22922206–22922325(+)22921906–22922006
28MI0002407ath-MIR447achr4:1528134–1528370(−)1529270–1529370
29MI0017896ath-MIR5026chr4:7844496–7844688(+)7842896–7842996
30MI0005405ath-MIR850chr4:7845707–7845927(+)7842907–7843007
31MI0005440ath-MIR863chr4:7846597–7846899(+)7842897–7842997
32MI0015815ath-MIR4221chr4:8460516–8460662(+)8459516–8459616
33MI0000210ath-MIR168achr4:10578635–10578772(+)10578335–10578435
34MI0000180ath-MIR156cchr4:15415418–15415521(−)15415821–15415921
35MI0019242ath-MIR5658chr4:18485438–18485531(−)18486431–18486531
36MI0000198ath-MIR164bchr5:287584–287736(+)287484–287584
37MI0000216ath-MIR172bchr5:1188207–1188301(−)1188501–1188601
38MI0000195ath-MIR162bchr5:7740598–7740708(−)7740908–7741008
39MI0019216ath-MIR5643achr5:11667797–11667879(+)11667197–11667297
40MI0001014ath-MIR396bchr5:13611798–13611932(+)13611698–13611798
41MI0000211ath-MIR168bchr5:18358788–18358911(−)18359011–18359111
42MI0001075ath-MIR405bchr5:20632514–20632637(+)20630514–20630614