Detecting Protein-Protein Interactions with a Novel Matrix-Based Protein Sequence Representation and Support Vector Machines

Table 4

Performance comparison of different methods on the H. pylori dataset. Here, N/A means not available.

Methods	SN (%)	PE (%)	ACC (%)	MCC (%)
Phylogenetic bootstrap	69.8	80.2	75.8	N/A
HKNN	86	84	84	N/A
Signature products	79.9	85.7	83.4	N/A
Boosting	80.37	81.69	79.52	70.64
Proposed method	85.27	83.33	85.91	75.53