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BioMed Research International
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2015
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Article
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Tab 1
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Research Article
A Practical and Scalable Tool to Find Overlaps between Sequences
Table 1
Previously presented solutions for APSP.
Solutions
Reference
Suffix tree
http://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/
ā
all_pairs_suffix_prefix_problem.tar.gz
Enhanced suffix array
http://www.uni-ulm.de/fileadmin/website_uni_ulm/iui.inst.190/Forschung/Projekte/seqana/
ā
all_pairs_suffix_prefix_problem.tar.gz
Sadakane suffix tree
http://confluence.qu.edu.qa/download/attachments/9240580/SADAApsp.zip
SGA
http://github.com/jts/sga/zipball/master
Readjoiner
http://www.zbh.uni-hamburg.de/?id=349