Development of Microsatellite Markers Derived from Expressed Sequence Tags of Polyporales for Genetic Diversity Analysis of Endangered Polyporus umbellatus
Table 2
Analysis of SSR markers in EST sequences of five families in Polyporales.
Nucleotide repeat
Ganodermataceae
Coriolaceae
Phanerochaetaceae
Polyporaceae
Total
Mono-
Number
6530
1607
41
2
8180
Number /Mb
200
53
289
19
821
%
79.8
19.6
0.5
0.02
100
Di-
Number
113
145
1
1
260
Number /Mb
3
5
7
10
25
%
43.46
55.77
0.38
0.38
100
Tri-
Number
386
430
—
—
816
Number /Mb
12
14
—
—
26
%
47.3
52.7
—
—
100
Tetra-
Number
8
9
—
—
17
Number /Mb
0.24
0.29
—
—
0.53
%
47.1
52.9
—
—
100
Penta-
Number
82
12
—
—
94
Number /Mb
2.51
0.39
—
—
2.9
%
87.23
12.77
—
—
100
Hexa-
Number
69
84
—
—
153
Number /Mb
2.1
2.7
—
—
4.8
%
45.1
54.9
—
—
100
Total
Number
7188
2287
42
3
9520
Number /Mb
113.12
36
0.66
0.05
149.81
%
75.5
24.02
0.44
0.03
100
Notes: no SSR sites were found in the EST sequences of Meruliaceae.