Characteristic Gene Expression Profiles of Human Fibroblasts and Breast Cancer Cells in a Newly Developed Bilateral Coculture System

Table 3

Enrichment analysis: upregulation in fibroblasts.

#	Upregulation: GO processes with MCF7	value	FDR
1	Regulation of programmed cell death
2	Regulation of cell death
3	Regulation of apoptotic process
#	Upregulation: GO processes with SKBR3	value	FDR
1	Cellular component organization
2	Cellular component organization or biogenesis
3	Response to stress
#	Upregulation: GO processes with HCC1937	value	FDR
1	Single-organism cellular process
2	Single-organism process
3	Response to hypoxia
#	Upregulation: metabolic networks with MCF7	value	FDR
1	(S)-Citrulline pathway
2	Glycine pathways and transport
3	L-Serine pathways and transport
#	Upregulation: metabolic networks with SKBR3	value	FDR
1	Carbohydrate metabolism_glycolysis, glycogenesis, and glucose transport
2	Carbohydrate metabolism_fructose metabolism and transport
3	(L)-Alanine pathways and transport
#	Upregulation: metabolic networks with HCC1937	value	FDR
1	Carbohydrate metabolism_glycolysis, glycogenesis, and glucose transport
2	Carbohydrate metabolism_fructose metabolism and transport
3	Carbohydrate metabolism_galactose metabolism and transport