Research Article

Identifying Liver Cancer-Related Enhancer SNPs by Integrating GWAS and Histone Modification ChIP-seq Data

Table 4

Summary of liver cancer-related regulatory SNPs and potential target genes validated by rVarBase.

SNP IDGene symbolEnsemble IDRegulation type

rs9494257BCLAF1ENSG00000029363Distal transcriptional regulation
rs9494257AHI1ENSG00000135541Distal transcriptional regulation
rs9494257LINC00271ENSG00000231028Distal transcriptional regulation
rs6903949MYBENSG00000118513Distal transcriptional regulation
rs6903949BCLAF1ENSG00000029363Distal transcriptional regulation
rs6903949AHI1ENSG00000135541Distal transcriptional regulation
rs6903949LINC00271ENSG00000231028Distal transcriptional regulation
rs6996881ZNF703ENSG00000183779Distal transcriptional regulation
rs6996881ERLIN2ENSG00000147475Distal transcriptional regulation
rs6996881NullENSG00000183154Distal transcriptional regulation
rs6996881NullENSG00000253161Distal transcriptional regulation
rs4739519ZNF703ENSG00000183779Distal transcriptional regulation
rs4739519NullENSG00000254290Distal transcriptional regulation
rs6988263ZNF703ENSG00000183779Distal transcriptional regulation
rs6988263NullENSG00000254290Distal transcriptional regulation
rs12156293ZNF703ENSG00000183779Distal transcriptional regulation
rs12156293NullENSG00000254290Distal transcriptional regulation
rs12156293ERLIN2ENSG00000147475Distal transcriptional regulation
rs12156293NullENSG00000183154Distal transcriptional regulation
rs1568658NullENSG00000228421Distal transcriptional regulation
rs1568658TRILENSG00000176734Distal transcriptional regulation
rs1568658NullENSG00000255690Distal transcriptional regulation
rs5994449DEPDC5ENSG00000100150Distal transcriptional regulation
rs5994449FBXO7ENSG00000100225Distal transcriptional regulation
rs5994449SYN3ENSG00000185666Distal transcriptional regulation
rs5994449PRR14LENSG00000183530Distal transcriptional regulation
rs5994449PISDENSG00000241878Distal transcriptional regulation
rs5994449EIF4ENIF1ENSG00000184708Distal transcriptional regulation
rs5994449RNU6-28ENSG00000199248Distal transcriptional regulation
rs5994449SFI1ENSG00000198089Distal transcriptional regulation
rs5753816YWHAHENSG00000128245Distal transcriptional regulation
rs5753816C22orf24ENSG00000128254Distal transcriptional regulation
rs5753816PISDENSG00000241878Distal transcriptional regulation
rs5753816DEPDC5ENSG00000100150Distal transcriptional regulation
rs5753816RNU6-28ENSG00000199248Distal transcriptional regulation
rs5753816SFI1ENSG00000198089Distal transcriptional regulation
rs5753816EIF4ENIF1ENSG00000184708Distal transcriptional regulation
rs5753816RFPL3SENSG00000205853Distal transcriptional regulation
rs5753816NullENSG00000230736Distal transcriptional regulation
rs5753816NullENSG00000243519Distal transcriptional regulation
rs5753816NullENSG00000241954Distal transcriptional regulation
rs5753816NullENSG00000232218Distal transcriptional regulation
rs5753816SYN3ENSG00000185666Distal transcriptional regulation