Research Article
Identification and Characterization of Small Noncoding RNAs in Genome Sequences of the Edible Fungus Pleurotus ostreatus
Table 3
Genomic loci, distance to gene boundary, and neighboring gene of miRNAs.
| ID | Location | Strand | Distance to gene boundary | Neighbor |
| miR-124-5p | scaffold_29_13029–13047 | + | Intron | g3043 | miR-190a-3p | scaffold48_55792–55810 | + | 53 | g13155 | miR-788-5p | scaffold8_754188–754207 | − | Intron | g9721 | miR-383-3p | scaffold_80_111549–111567 | − | Intron | g8156 | miR-466g | scaffold8_19655–19673 | − | 94 | g9475 | miR1171 | scaffold_70_119604–119626 | + | 2094 | g7800 | miR-467g | scaffold_26_54067–54085 | − | 147 | g2750 | miR-190a-3p | scaffold48_55792–55810 | + | 53 | g13155 | miR1427 | scaffold85_42007–42025 | − | 110 | g4652 | miR2095-5p | scaffold_29_43092–43110 | + | 1121 | g3054 | miR-788 | scaffold8_754188–754207 | − | Intron | g9721 | miR2673a | scaffold32_244540–244559 | + | 71 | g12059 | miR2673a | scaffold25_190886–190904 | + | Intron | g11628 | miR2673a | scaffold_15_223801–223819 | − | Intron | g1786 | miR2673b | scaffold32_244540–244559 | + | 71 | g12059 | miR2673b | scaffold25_190886–190904 | + | Intron | g11628 | miR2673b | scaffold_15_223801–223819 | − | Intron | g1786 | miR-2709 | scaffold64_62205–62223 | + | Intron | g4162 | miR-2783 | scaffold392_645–663 | + | Intron | g5776 | miR-190a-3p | scaffold48_55792–55810 | + | 53 | g13155 | miR156h-3p | scaffold151_19717–19735 | − | Intron | g5461 | miR4243 | scaffold_15_464570–464589 | − | Intron | g1895 | miR-3677-5p | scaffold61_171654–171672 | − | 363 | g4080 | miR-3775 | scaffold1170_174–192 | − | Intron | g6228 | miR3948 | scaffold155_16079–16098 | + | 3715 | g5479 | miR3948 | scaffold8_7775–7794 | − | Intron | g9470 | miR-4459 | scaffold7_14624–14642 | + | Intron | g9172 | miR-4968-3p | scaffold_14_64946–64966 | − | Intron | g1539 | miR-4968-3p | scaffold34_263134–263153 | − | Intron | g12318 | miR-4968-3p | scaffold_24_6521–6540 | − | Intron | g2572 | miR-4968-3p | scaffold3_287008–287026 | + | Intron | g8829 | miR-5352-5p | scaffold53_49526–49544 | − | Intron | g13380 | miR-5455-3p | scaffold54_13491–13509 | − | Intron | g3643 | miR-6012-5p | scaffold14_172648–172666 | − | Intron | g10243 | miR6214 | scaffold58_68922–68940 | − | Intron | g3823 | miR-6606-5p | scaffold_19_158806–158825 | + | Intron | g2084 | miR-7426-5p | scaffold46_187269–187287 | + | Intron | g13115 | miR7734-3p | scaffold21_198083–198101 | + | Intron | g11335 | miR-190a-3p | scaffold48_55792–55810 | + | 53 | g13155 | miR-8481-5p | scaffold1214_35–53 | + | Intron | g6248 | miR-8922 | scaffold21_9675–9693 | + | Intron | g11273 | miR-8986a | scaffold_4_231055–231073 | − | Intron | g184 | miR-9189b | scaffold_24_289739–289757 | − | Intron | g2662 | miR-9400-5p | scaffold3_354824–354842 | + | Intron | g8861 | miR-190a-3p | scaffold48_55792–55810 | + | 53 | g13155 | miR9773 | scaffold390_1391–1409 | − | 292 | g5774 |
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