Horizontally Transferred Genetic Elements in the Tsetse Fly Genome: An Alignment-Free Clustering Approach Using Batch Learning Self-Organising Map (BLSOM)

Table 2

Origins of HGT candidates at the genus level.

Phylum	Genus^1	Number of contigs
Alphaproteobacteria	Anaplasma	4
	Bartonella	8
	Ehrlichia	1
	Neorickettsia	8
	Rickettsia	5
	Wolbachia	56
	Unassigned	8
Bacteroidetes	Bacteroides	4
	Cytophaga	1
	Dyadobacter	1
	Flavobacteria^2	187
	Flavobacterium	12
	Kordia	18
	Leadbetterella	3
	Mucilaginibacter	1
	Paludibacter	9
	Pedobacter	1
	Polaribacter	37
	Prevotella	10
	Psychroflexus	4
	Spirosoma	4
	Unassigned	78
Firmicutes	Clostridium	4
	Bacillus	239
	Enterococcus	83
	Epulopiscium	4
	Erysipelothrix	1
	Geobacillus	3
	Lactobacillus	4
	Lactococcus	1
	Leuconostoc	17
	Listeria	31
	Lysinibacillus	7
	Oenococcus	1
	Paenibacillus	1
	Peptoniphilus	1
	Staphylococcus	134
	Streptococcus	9
	Thermoanaerobacter	3
	Turicibacter	2
	Veillonella	3
	Unassigned	210
Gammaproteobacteria	Acinetobacter	4
	Enterobacter	6
	Escherichia	1
	Haemophilus	1
	Shewanella	1
	Vibrio	1
	Xylella	1
	Unassigned	8

Prediction was obtained using Genus-BLSOM. ²Classification to the class level was obtained.