Horizontally Transferred Genetic Elements in the Tsetse Fly Genome: An Alignment-Free Clustering Approach Using Batch Learning Self-Organising Map (BLSOM)
Table 2
Origins of HGT candidates at the genus level.
Phylum
Genus1
Number of contigs
Alphaproteobacteria
Anaplasma
4
Bartonella
8
Ehrlichia
1
Neorickettsia
8
Rickettsia
5
Wolbachia
56
Unassigned
8
Bacteroidetes
Bacteroides
4
Cytophaga
1
Dyadobacter
1
Flavobacteria2
187
Flavobacterium
12
Kordia
18
Leadbetterella
3
Mucilaginibacter
1
Paludibacter
9
Pedobacter
1
Polaribacter
37
Prevotella
10
Psychroflexus
4
Spirosoma
4
Unassigned
78
Firmicutes
Clostridium
4
Bacillus
239
Enterococcus
83
Epulopiscium
4
Erysipelothrix
1
Geobacillus
3
Lactobacillus
4
Lactococcus
1
Leuconostoc
17
Listeria
31
Lysinibacillus
7
Oenococcus
1
Paenibacillus
1
Peptoniphilus
1
Staphylococcus
134
Streptococcus
9
Thermoanaerobacter
3
Turicibacter
2
Veillonella
3
Unassigned
210
Gammaproteobacteria
Acinetobacter
4
Enterobacter
6
Escherichia
1
Haemophilus
1
Shewanella
1
Vibrio
1
Xylella
1
Unassigned
8
Prediction was obtained using Genus-BLSOM. 2Classification to the class level was obtained.