SNP Mining in Functional Genes from Nonmodel Species by Next-Generation Sequencing: A Case of Flowering, Pre-Harvest Sprouting, and Dehydration Resistant Genes in Wheat

Table 3

The sequence variation information of functional gene by 6% MAF.

Name	Length	Assembled reads		Nonassembled reads		Pretrimmed reads		Original reads
		Number	Ratio	Number	Ratio	Number	Ratio	Number	Ratio
ABA8OH	654	5	0.76%	19	2.91%	13	1.99%	20	3.06%
ABI5	1540	159	10.32%	171	11.10%	145	9.42%	152	9.87%
ACC1	1131	10	0.88%	14	1.24%	10	0.88%	16	1.41%
APX	1354	97	7.16%	86	6.35%	83	6.13%	96	7.09%
DRF	963	42	4.36%	39	4.05%	41	4.26%	46	4.78%
EMH5	443	21	4.74%	29	6.55%	20	4.51%	27	6.09%
ERD4	810	46	5.68%	44	5.43%	42	5.19%	45	5.56%
FUC3	564	18	3.19%	13	2.30%	20	3.55%	22	3.90%
GSK	527	9	1.71%	9	1.71%	15	2.85%	20	3.80%
HKT8	866	51	5.89%	36	4.16%	44	5.08%	56	6.47%
LEA1	816	14	1.72%	44	5.39%	44	5.39%	61	7.48%
LEC1	910	92	10.11%	90	9.89%	83	9.12%	110	12.09%
PhyC	934	19	2.03%	30	3.21%	31	3.32%	36	4.07%
Q	809	4	0.49%	28	3.46%	25	3.09%	35	4.20%
WDAI	446	44	9.87%	47	10.54%	38	8.52%	34	7.62%
ZCCT1	669	28	4.19%	34	5.08%	21	3.14%	28	4.19%