BioMed Research International

Research Article

A Novel Peptide Binding Prediction Approach for HLA-DR Molecule Based on Sequence and Structural Information

Table 2

30 HLA-complexes binding pockets.
PDB ID Pocket  1Pocket 2Pocket 3Pocket 4Pocket 5Pocket 6Pocket 7Pocket 8Pocket 9
1AQD82N 85V 86G77T 78Y 81H 82N78Y13F 74A 78Y 13F 71R11L47Y 61W 67L 70Q 71R60Y 61W9W 57D 61W
1PYW82N 85V 86G 89F77T 78Y 81H 82N78Y13F 70Q 71R 74A 78Y13F 71R11L11L 28E 61W 71R60Y 61W57D 61W
1KLG82N 85V78Y 81H 82N78Y13F 71R 78Y13F 71R11L61W60Y 61W57D 61W
2FSE82N 85V 86G 89F77T 78Y 82N 13F 28E 70Q 71R 74A 78Y13F 71R71R28E 47Y 61W 67L
71R		61W57D
1KLU82N 85V78Y 81H 82N 13F 71R 78Y13F 71R11L61W60Y 61W57D 61W
1SJH82N78Y 81H 82N 13F 26L 70Q 71R 74A 78Y71R11L61W60Y 61W57D 61W
1SJE82N78Y 81H 82N78Y13F 26L 70Q 71R 74A 78Y71R11L61W60Y 61W57D 60Y 61W
1T5W82N 86G 89F78Y 81H 82N78Y13F 70Q 71R 74A 78Y13F 71R11L61W 71R60Y 61W9W 57D 61W
1T5X82N 86G 89F78Y 81H 82N78Y13F 70Q 71R 74A 78Y71R11L61W 71R61W57D 61W
2IAN82N 85V78Y 81H 82N78Y13F 70Q 74A 78Y13F 70Q 71R11L61W 71R61W57D 61W
2IPK82N 85V 86G 89F77T 78Y 81H 82N 13F 70Q 71R 74A 78Y71R11L47Y 61W 67L 71R60Y 61W9W 57D 61W
1FYT82N 85V 86G 89F78Y 81H 82N78Y13F 70Q 71R 74A 78Y13F 71R11L28E 47Y 61W 67L 71R60Y 61W9W 57D 61W
1R5I82N 85V 86G 89F77T 78Y 81H 82N78Y13F 70Q 71R 74A 78Y70Q 71R11L47Y 61W 67L 71R61W9W 57D 61W
1HXY82N 85V 86G 89F78Y 81H 82N 13F 70Q 71R 74A 78Y71R11L28E 47Y 61W 67L 71R60Y 61W9W 57D 61W
1JWM82N 85V 86G 89F78Y 81H 82N78Y13F 70Q 71R 74A 78Y71R11L28E 47Y 61W 67L 71R61W57D 61W
1JWS82N 85V 86G 89F78Y 81H 82N78Y13F 70Q 71R 74A 78Y13F 71R11L47Y 61W 67L 71R61W9W 57D 61W
1JWU82N 85V 86G 89F78Y 81H 82N78Y13F 70Q 71R 74A 78Y13F 71R11L28E 47Y 61W 67L 71R61W9W 57D 61W
1LO582N 85V 86G 89F78Y 81H 82N78Y13F 70Q 78Y13F 71R11L47Y 61W 67L 71R61W9W 57D 60Y 61W
2ICW82N 85V 86G 89F78Y 81H 82N78Y13F 70Q 71R 74A 78Y13F 71R11L28E 47Y 61W 67L 71R61W9W 57D 61W
2OJE82N 85V 86G 77T 78Y 81H 82N78Y13F 70Q 71R 74A 78Y70Q 71R11L28E 47Y 61W 67L 71R61W9W 57D 61W
2G9H82N 85V 86G 89F77T 78Y 81H 82N78Y13F 70Q 71R 74A 78Y71R11L 13F28E 47Y 61W 67L 71R60Y 61W9W 57D 61W
2IAM82N78Y 81H 82N78Y13F 70Q 71R 74A 78Y70Q 71R11L61W 67L
71R		60Y 61W57D 61W
1A6A82N 85V 86V77T 78Y 81H 82N78Y13S 26Y 74R 78Y71K 74R11S 30Y30Y 47F 61W 67L 71K61W9E 30Y 57D 61W
1J8H82N 85V 86G 89F77T 78Y 81H 82N78Y13H
26F 28D 70Q 74A 78Y		13H 70Q 71K11V 13H 30Y30Y 47Y 61W 67L 60Y 61W37Y 57D 61W
2SEB82N77T 78Y 81H 82N 13H
26F
71K
78Y		13H 71K30Y30Y 47Y 61W 60Y 61W61W
1BX282N 85V 77T 78Y 81H 82N78Y13H
26F 28D 70Q 74A 78Y		70Q13R  57D 60Y 61W
1YMM82N77T 78Y 81H 82N78Y13R
26F 28D 70Q 74A 78Y		70Q13R61W 67I 61W57D 61W
1FV182N 85V 86G 89F78Y 81H 82N78Y13Y 71R 78Y71R13Y61W 67L
71K		 61W57D
1H1582N 89F77T 78Y 81H 82N78Y13Y 71R 78Y71R11D 13Y 30D61W 57D 60Y
1ZGL82N 85V 89F77T 78Y 81H 82N 13Y 26F 71R 78Y13Y13Y 28H 61W 71R61W 57D 60Y 61W