Genomic Analysis of the Chicken Infectious Anemia Virus in a Specific Pathogen-Free Chicken Population in China

Table 1

Information of CIAV reference strains and amino acids in highly variable regions of VP1 protein.

Strains	Country and time	Accession number	Whole length	Amino acid position of VP1
				139#	144#
M81223	1993, Germany	M81223	2298 bp	Lysine	Aspartate
CAU65414	1996, Australia	CAU65414	2298 bp	Glutamine	Glutamine
TR20	1999, Japan	AB027470	2298 bp	Glutamine	Glutamine
L14767	1999, USA	L14767	2298 bp	Glutamine	Glutamine
A2	2000, Japan	AB031296	2298 bp	Lysine	Glutamine
AF227982	2001, Australia	AF227982	2286 bp	Lysine	Glutamine
AB046590	2001, Japan	AB046590	2298 bp	Lysine	Glutamine
AF475908	2002, China	AF475908	2298 bp	Lysine	Glutamine
clone 33	2002, Germany	AJ297684	2298 bp	Lysine	Glutamine
SMSC-1P60	2003, Malaysia	AF390102	2298 bp	Lysine	Glutamine
BD-3	2004, Bangladesh	AF395114	2298 bp	Glutamine	Glutamine
TJBD40	2004, China	AY846844	2298 bp	Lysine	Glutamine
AH6	2005, China	DQ124935	2298 bp	Glutamine	Glutamine
TJBD33	2005, China	AY843527	2298 bp	Lysine	Glutamine
SMSC-1P123WT	2005, Malaysia	DQ217401	2298 bp	Lysine	Glutamine
CAE26P4	2007, Netherlands	D10068	2298 bp	Lysine	Glutamine
3711	2007, Australia	EF683159	2279 bp	Lysine	Glutamine
C14	2007, China	EF176599	2298 bp	Lysine	Glutamine
01-4201	2007, USA	DQ991394	2298 bp	Lysine	Glutamine
SDLY08	2008, China	FJ172347	2298 bp	Lysine	Glutamine
CAECA123	2008, Japan	D31965	2319 bp	Lysine	Glutamine
AB119448	2009, Japna	AB119448	2298 bp	Glutamine	Glutamine
98D02152	2010, USA	AF311892	2298 bp	Lysine	Glutamine
GD-1-12	2012, China	JX260426	2298 bp	Lysine	Glutamine
GD-K-12	2013, China	KF224935	2298 bp	Glutamine	Glutamine
GD-L-12	2013, China	KF224936	2298 bp	Lysine	Glutamine
CIAV89-69	2013, Korea	JF507715	2298 bp	Lysine	Glutamine
CAV-10	2014, Argentina	KJ872513	2298 bp	Glutamine	Glutamine
SC-MS	2014, China	KM496305	2298 bp	Lysine	Glutamine
NC001427	2015, USA	NC001427	2319 bp	Lysine	Aspartate
SD1403	2016, China	KU221054	2298 bp	Glutamine	Glutamine