Genome-Wide Identification and Characterization of bZIP Transcription Factors in Brassica oleracea under Cold Stress

Table 3

Cold-treatment induced change in expression based on RNA sequencing data. The differentially expressed genes determined based on fold change (FC) ≥2 are displayed with bold font and ≤0.5 with italic font.

Locus_ID	FC1		FC2		Contigs; length (bp)	BRAD; Bol number	CDS; length (bp)	A. thaliana; homologs	Published; name
	(BN106)	value	(BN107)	value
Locus_01882	2.18 ± 0.11	0.0031	1.48 ± 0.02	0.0053	1948	Bol009713	1152	AT1G22070
Locus_01909	0.16 ± 0.01	0.0052	0.65 ± 0.05	0.0105	1555	Bol001886	921	AT2G42380
Locus_04358	3.84 ± 0.02	0.0002	NC	NC	1583	Bol044598	426	AT3G62420
Locus_05013	4.58 ± 0.21	0.0158	1.89 ± 0.51	0.0044	1207	Bol012472	513	AT2G18160	GBF5
Locus_06292	2.35 ± 0.05	0.0044	1.20 ± 0.03	0.0474	1081	Bol013712	798	AT4G35040
Locus_08860	13.09 ± 0.32	0.0006	2.08 ± 0.11	0.0002	1541	Bol027526	2376	AT1G77920	TGA7
Locus_10723	2.99 ± 0.19	0.0012	2.28 ± 0.35	0.0077	1579	Bol026864	1380	AT1G19490
Locus_10986	0.06 ± 0.00	0.0062	0.76 ± 0.04	0.0017	1117	Bol016607	429	AT5G49450
Locus_11058	0.57 ± 0.03	0.0177	0.60 ± 0.04	0.0497	1354	Bol004832	903	AT2G42380
Locus_11330	0.27 ± 0.01	0.0133	1.51 ± 0.33	0.0628	775	Bol042729	513	AT2G04038
Locus_12559	0.35 ± 0.01	0.0090	0.87 ± 0.07	0.0994	1451	Bol028975	942	AT4G36730	GBF1
Locus_14643	0.83 ± 0.19	0.2500	0.32 ± 0.10	0.0346	816	Bol033132	516	AT3G30530
Locus_14780	4.80 ± 0.93	0.0083	0.78 ± 0.03	0.0182	1882	Bol014051	516	AT1G32150
Locus_15053	0.15 ± 0.00	0.0049	0.47 ± 0.03	0.0260	1757	Bol011470	1092	AT4G01120	GBF2
Locus_16059	4.67 ± 2.83	0.0358	1.29 ± 0.28	0.3559	873	Bol027732	1116
Locus_18258	1.46 ± 0.81	0.3124	NC	NC	1013	Bol011719	1299	AT2G36270	ABI5
Locus_19284	0.48 ± 0.02	0.0023	1.00 ± 0.16	0.0535	1580	Bol006077	1179	AT4G02640	BZO2H1
Locus_19975	5.14 ± 0.02	0.0015	3.11 ± 0.24	0.0000	1113	Bol028894	741	AT4G37730
Locus_20038	2.25 ± 0.04	0.0002	0.74 ± 0.09	0.0017	2250	Bol033853	1233	AT4G34000	ABF3
Locus_21455	2.15 ± 0.03	0.0012	1.32 ± 0.05	0.0174	1248	Bol041488	510	AT2G18160	GBF5
Locus_22202	2.90 ± 0.22	0.0078	0.67 ± 0.03	0.0061	1566	Bol000879	936	AT2G46270	GBF3
Locus_22929	0.27 ± 0.05	0.0569	0.58 ± 0.11	0.0236	890	Bol037803	801
Locus_25534	7.11 ± 1.40	0.0024	1.87 ± 0.19	0.0400	1165	Bol039895	537	AT1G75390
Locus_27120	0.13 ± 0.16	0.0645	NC	NC	545	Bol008071	606
Locus_28516	NC	NC	NC	NC	284	Bol033493	933	AT1G35490
Locus_31552	0.29 ± 0.05	0.0628	NC	NC	329	Bol006902	720	AT2G41070	DPBF4
Locus_31870	6.75 ± 3.18	0.0743	0.51 ± 0.17	0.1589	386	Bol037733	321
Locus_35274	0.57 ± 0.02	0.0027	0.19 ± 0.22	0.0014	1107	Bol016432	870	AT5G24800	BZO2H2
Locus_35336	0.12 ± 0.00	0.0113	0.17 ± 0.04	0.0006	969	Bol021255	585	AT5G15830
Locus_35982	4.94 ± 0.07	0.0010	3.61 ± 0.30	0.0016	1216	Bol034676	429	AT4G34590	ATB2/GBF6
Locus_36644	0.40 ± 0.06	0.0362	0.70 ± 0.07	0.1179	1588	Bol008040	1143	AT5G65210	TGA1
Locus_38207	0.56 ± 0.06	0.0396	0.18 ± 0.21	0.0272	673	Bol005115	1032	AT2G40620
Locus_38300	1.23 ± 0.64	0.5000	0.00	NC	318	Bol018596	732	AT4G37730
Locus_38533	4.51 ± 0.34	0.0023	0.85 ± 0.09	0.0454	1978	Bol043707	1095	AT5G10030	TGA4
Locus_38636	9.75 ± 0.87	0.0272	0.56 ± 0.05	0.0346	487	Bol030865	438	AT3G17609	HYH
Locus_39177	1.20 ± 0.18	0.1749	0.38 ± 0.01	0.0054	839	Bol043589	495	AT5G11260	HY5
Locus_39837	0.78 ± 0.05	0.0267	2.20 ± 1.21	0.0097	1648	Bol041035	1038	AT1G06070
Locus_39980	NC	NC	NC	NC	478	Bol038660	453	AT3G17609	HYH
Locus_41080	0.07 ± 0.04	0.0033	2.32 ± 0.80	0.0840	677	Bol010390	597	AT1G13600
Locus_44632	NC	NC	NC	NC	256	Bol029939	798	AT4G35900	FD-1
Locus_44950	2.86 ± 0.00	0.0052	1.32 ± 0.05	0.0301	1447	Bol024526	981	AT5G06960	TGA5/OBF5
Locus_45018	NC	NC	0.70 ± 0.02	0.0223	667	Bol022925	447	AT3G17609	HYH
Locus_46951	0.15 ± 0.17	0.0257	NC	NC	462	Bol020032	270	AT2G04038
Locus_47897	NC	NC	NC	NC	458	Bol037334	561	AT3G49760
Locus_49075	0.39 ± 0.10	0.0149	2.76 ± 0.40	0.0145	739	Bol034371	537	AT5G15830
Locus_55049	NC	NC	0.57 ± 0.29	0.1464	311	Bol018688	846	AT4G35900	FD-1
Locus_56035	0.04 ± 0.00	0.0010	0.15 ± 0.06	0.0055	662	Bol032354	420	AT5G49450

NC, not calculated. FC1, signal intensity of 0°C treated plant over control plant (22°C) in BN106. FC2, signal intensity of 0°C treated plant over control plant in BN107.