Research Article

RNA Sequencing Reveals Xyr1 as a Transcription Factor Regulating Gene Expression beyond Carbohydrate Metabolism

Table 1

Changes in CAZome gene expression between T. reesei Rut-C30 and Δxyr1 under the lignocellulose condition.

Protein IDlog2 ratio Rut-C30/Δxyr1-value

Cellulases
 Endoglucanase 1 cel7b53049.643320
 Endoglucanase 2 cel5a7248910.41870
 Endoglucanase 3 cel12a1244388.46247
 Endoglucanase 5 cel45a259409.22161
 Exoglucanase 1 cel7a12512510.8384
 Exoglucanase 2 cel6a12247010.6842
 Cellulase enhancing protein cel61a13963310.1565
 Cellulase enhancing protein cel61b12251810.063
β-Glucosidase 1 cel3a1365475.89937
β-Glucosidase 2 cel1a1271151.83786
β-Glucosidase cel1b779892.52453
β-Glucosidase cel3d1226394.99120
β-Glucosidase cel3e743051.245050.002047
β-Glucosidase0.004262

Hemicellulases
 Acetylxylan esterase axe113963110.49070
 Acetylxylan esterase888878.921338
α-Galactosidase716384.96894
α-N-Arabinofuranosidase abf11025173.19423
α-Xylosidase1344486.166894
β-Xylosidase775214.332579
 Endo-1,4-β-xylanase 1 xyn1384183.793969
 Endo-1,4-β-xylanase 2 xyn212493110.536
 Endo-1,4-β-xylanase 3 xyn32361610.5316
 Mannan endo-1,6-α-mannosidase1268691.63426
α-L-Arabinofuranosidase abf21180706.129569
β-Galactosidase1013462.59714
β-Mannosidase674325.82358
 Exo-1,4-β-xylosidase14074611.148
 Mannan endo-1,4-β-mannosidase1223777.256397
 Xyloglucanase1119436.34823
 Glucuronoxylanase xynC9349810.5903
α-Glucuronidase903028.110081

Nonenzymatic cellulose attacking enzymes
 Cip112144910.4170
 Cip212557511.08290
 Swollenin1042208.730370

Chitinases
 Chitinase940610.009666
 Chitinase142298
 Chitinase7503
 Endochitinase33168
 Endochitinase33886
 Endochitinase124526
 Endochitinase142123
 Exochitinase104242

Glucan 1,3-β-glucosidase
 Glucan endo-1,3-β-glucosidase1254260.00101449
 Glucan endo-1,3-β-glucosidase1254270.00104273
 Glucan 1,3-β-glucosidase25104
 Glucan endo-1,3-β-glucosidase103726

Other glycoside hydrolases
 Probable exopolygalacturonase X91667
 Glucuronoxylanase xynC90847
 Endo-β-1,6-galactanase11580
 1,3-β-Glucanosyltransferase gel4103899
 Probable endopolygalacturonase133383
 1,4-α-Glucan-branching enzyme114146
 Putative endo-1,3(4)-β-glucanase 2100837
α-1,2-Mannosidase122299
 Glucan endo-1,3-α-glucosidase agn194877