Research Article
PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data Sets
Table 7
Results on the mESC data.
| Data set | Published motif | PairMotifChIP | PairMotif+ | Time | Predicted motif | Time | Predicted motif |
| c-Myc | | 37.2 s | | 4106.1 s | | CTCF | | 29.1 s | | 23584.3 s | | Esrrb | | 25.6 s | | 7424.6 s | | Klf4 | | 29.3 s | | 3558.5 s | | Nanog | | 24.3 s | | 1975.6 s | | n-Myc | | 36.3 s | | 33962.6 s | — | Oct4 | | 8.9 s | | 2608.8 s | | Smad1 | | 20.3 s | | 5296.1 s | — | Sox2 | | 23.1 s | | 4115.2 s | | STAT3 | | 22.9 s | | 6342.6 s | — | Tcfcp2I1 | | 23.5 s | | 2269.5 s | — | Zfx | | 42.2 s | | 3617.2 s | |
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Note. —: there is no motif overlapping the published motif in the top ten predicted motifs.
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