Table 5: Distribution of penta and hexa single sequence repeats (SSRs) in G. raimondii mt genome.

SSR typeSSR sequenceSSR size (bp)StartEndLocation

penta(TATTA) ×3155052950543IGS (rps10-exon1, atp1)
penta(AAAAT) ×3158512385137IGS (nad9, nad4-exon4)
penta(GTCTG) ×3158937889392nad4-intron3
penta(GTTTT) ×420159380159399IGS (trnS-UGA, nad1-exon4)
penta(ACTAG) ×315166777166791matR
penta(CTTAG) ×315279862279876IGS (rps14, rps4)
penta(ATTAC) ×315339824339838IGS (trnS-GCU, nad4L)
penta(CCTTT) ×315420008420022IGS (atp8, nad1-exon1)
penta(AAAAT) ×315536356536370IGS (nad9, nad4-exon4)
penta(GTCTG) ×315540603540617nad4-intron3
penta(AATAA) ×315583684583698IGS (trnG-GCC, trnQ-UUG)
penta(TTTTA) ×525663479663503IGS (atp4, ccmFc-exon1)
hexa(ACCAAT) ×318294266294283IGS (rps4, cox2-exon1)
hexa(TTCTCT) ×318594736594753IGS (trnQ-UUG, nad6)

IGS: intergenic spacers.