Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches

Table 5

Distribution of penta and hexa single sequence repeats (SSRs) in G. raimondii mt genome.

SSR type	SSR sequence	SSR size (bp)	Start	End	Location
penta	(TATTA) ×3	15	50529	50543	IGS (rps10-exon1, atp1)
penta	(AAAAT) ×3	15	85123	85137	IGS (nad9, nad4-exon4)
penta	(GTCTG) ×3	15	89378	89392	nad4-intron3
penta	(GTTTT) ×4	20	159380	159399	IGS (trnS-UGA, nad1-exon4)
penta	(ACTAG) ×3	15	166777	166791	matR
penta	(CTTAG) ×3	15	279862	279876	IGS (rps14, rps4)
penta	(ATTAC) ×3	15	339824	339838	IGS (trnS-GCU, nad4L)
penta	(CCTTT) ×3	15	420008	420022	IGS (atp8, nad1-exon1)
penta	(AAAAT) ×3	15	536356	536370	IGS (nad9, nad4-exon4)
penta	(GTCTG) ×3	15	540603	540617	nad4-intron3
penta	(AATAA) ×3	15	583684	583698	IGS (trnG-GCC, trnQ-UUG)
penta	(TTTTA) ×5	25	663479	663503	IGS (atp4, ccmFc-exon1)
hexa	(ACCAAT) ×3	18	294266	294283	IGS (rps4, cox2-exon1)
hexa	(TTCTCT) ×3	18	594736	594753	IGS (trnQ-UUG, nad6)

IGS: intergenic spacers.