Research Article

Burkholderia contaminans Biofilm Regulating Operon and Its Distribution in Bacterial Genomes

Table 2

Main domain of the proteins, coding by BiofilmReg operon genes.

NOperon gene locus tag/protein domains nameStrain name (GenBank: Accession Number)Operons schematic presentation
1234

11126…1830 (KP288492.1)/
PRK11083 (CreB)
1827…3188 (KP288492.1)/
LysM, FecR
1…2388 (KU252679)/
PAS9, NtrB
2426…3040 (KU252679)/
DUF4136
Burkholderia contaminans strain GIMC4509:Bct370 (KP288492.1; KU252679)
2BCEP18194_RS13000/
PRK11083 (CreB)
BCEP18194_RS13005/
LysM, FecR
BCEP18194_RS13010/
PAS9, NtrB
BCEP18194_RS13015/
DUF4136
Burkholderia lata strain Burkholderia sp. 383 chromosome 1, complete sequence (NC_007510.1)
3NL30_RS08520/
PRK11083 (CreB)
NL30_RS08515/
LysM, FecR
NL30_RS08510/
PAS9, NtrB
NL30_RS08505/
DUF4136
Burkholderia contaminans strain MS14 chromosome 1, complete sequence (NZ_CP009743)
4AK34_RS21645/
PRK11083 (CreB)
AK34_RS21640/
LysM, FecR
AK34_RS21635/
PAS9, BaeS
AK34_RS21630/
DUF4136
Burkholderia dolosa AU0158 chromosome 1, complete sequence (NZ_CP009795)
5BMULJ_RS06770/
PRK11083 (CreB)
BMULJ_RS06775/
LysM, FecR
BMULJ_RS06780/
PAS9, BaeS
BMULJ_RS06785/
DUF4136
Burkholderia multivorans ATCC 17616 DNA, complete genome, chromosome 1 (NC_010804.1)
6BCEP1808_RS07040/
PRK11083 (CreB)
BCEP1808_RS07045/
LysM, FecR
BCEP1808_RS07050/
PAS9, NtrB
BCEP1808_RS07055/
DUF4136
Burkholderia vietnamiensis G4 chromosome 1, complete sequence (NC_009256.1)
7QU43_RS43720/
PRK11083 (CreB)
QU43_RS43725/
LysM, FecR
QU43_RS437230/
PAS9, NtrB
QU43_RS43735/
DUF4136
Burkholderia cenocepacia J2315 chromosome 1, complete genome (NC_011000.1)
8BCEN2424_RS07115/
PRK11083 (CreB)
BCEN2424_RS07120/
LysM, FecR
BCEN2424_RS07125/
PAS9, NtrB
BCEN2424_RS07130/
DUF4136
Burkholderia cenocepacia HI2424 chromosome 1, complete sequence (NC_008542.1)
9HMPREF0551_RS12390/
PRK10643 (BasR)
HMPREF0551_RS12385/
LysM, FecR
HMPREF0551_RS12380/
PAS absent, BaeS
HMPREF0551_RS12375/
glutamyl-tRNA
reductase
Lautropia mirabilis ATCC 51599 genomic scaffold SCAFFOLD1, whole genome shotgun sequence (NZ_GL636062.1)
10QWA_RS04640/
PRK11083 (CreB)
QWA_RS04635/
LysM, FecR
QWA_RS04630/
PAS absent, BaeS
QWA_RS04625/
AraC family
transcriptional regulator
Alcaligenes faecalis subsp. faecalis NCIB 8687 Contig_3, whole genome shotgun sequence (NZ_AKMR01000003.1)
11NH44784_RS11280/
PRK10336 (QseB)
NH44784_RS11275/
LysM, FecR
NH44784_RS11270/
PAS4, BaeS
Achromobacter xylosoxidans NH44784-1996 complete genome (NC_021285.1)
12ERS451415_06153/
PRK11083 (CreB)
ERS451415_06154/
LysM, FecR
ERS451415_06155/
PAS9, BaeS
Achromobacter xylosoxidans NCTC10807 (LN831029.1)
13Axylo_5268/
PRK11083 (CreB)
Axylo_5269/
LysM, FecR
Axylo_5270/
PAS9, BaeS
Achromobacter xylosoxidans strain MN001, complete genome (CP012046.1)
14Complement (1269…3539)/
PRK11083 (CreB)
Complement (3601…4710)/
LysM, FecR
Complement (4744…5460)/
PAS9, BaeS
Achromobacter ruhlandii SCCH3:Ach 33-1365, ST36 (KU252680)
15AXXA_RS10090/
PRK10336 (QseB)
AXXA_RS10095/
LysM, FecR
AXXA_RS10100/
PAS4, BaeS
Achromobacter insuavis AXX-A genomic scaffold scaffold00003, whole genome shotgun sequence (NZ_GL982453.1)
16BN115_RS00125/
PRK11083 (CreB)
BN115_RS00120/
LysM, FecR
BN115_RS00115/
PAS9, BaeS
Bordetella bronchiseptica MO149 complete genome (NC_018829.1)
17BN118_RS00125/
PRK11083 (CreB)
BN118_RS00120/
LysM, FecR
BN118_RS00115/
PAS9, BaeS, no cataliticdamain
Bordetella pertussis 18323 complete genome (NC_018518.1)
18RPIC_RS04635/
PRK11083 (CreB)
RPIC_RS04640/
LysM, FecR
RPIC_RS04645/
PAS4, BaeS
Ralstonia pickettii 12J chromosome 1, complete sequence (NC_010682.1)
19N234_RS31485/
PRK11083 (CreB)
N234_RS31480/
LysM, FecR, COG4733, phage-related protein, tail component
N234_RS31475/
PAS4, BaeS
Ralstonia pickettii DTP0602 chromosome 2, complete sequence (NC_022514.1)
20ABW99_RS09030/
LysM, FecR
ABW99_RS09035/
PAS4, BaeS
Pandoraea thiooxydans DSM 25325, complete genome (NZ_CP011568.1)
21PA4035/
Lys M truncated, FecR
PA4036/
PAS4, BaeS
Pseudomonas aeruginosa PAO1 chromosome, complete genome (NC_002516.2)


in domain/operon organization or localization are underlined.