Research Article
Genetic Characterization of a Novel Mutant of Peste Des Petits Ruminants Virus Isolated from Capra ibex in China during 2015
Table 4
The nucleotide identity of the regions of China/XJBZ/2015 compared with the reference strains used in this study.
| | Virus strain | 3′ UTR | N | P | V | C | M | F | H | L | 5′ UTR | Genome | F-322 | N-255 |
| | China/BJ/2014 | 100 | 98.9 | 99.7 | 97.0 | 99.8 | 98.9 | 98.4 | 99.3 | 99.5 | 99.1 | 99.1 | 99.7 | 97.3 | | CH/HNZK/2014 | 100 | 99.7 | 99.6 | 96.8 | 99.4 | 98.9 | 98.5 | 99.4 | 99.6 | 100 | 99.3 | 99.7 | 100 | | CH/HNZM/2014 | 98.1 | 99.6 | 99.8 | 97.1 | 100 | 98.7 | 98.3 | 99.3 | 99.5 | 100 | 99.2 | 99.1 | 100 | | CH/HNNY/2014 | 98.1 | 99.7 | 99.7 | 96.9 | 99.6 | 98.9 | 98.4 | 99.3 | 99.4 | 100 | 99.2 | 99.7 | 100 | | China/XJYL/2013 | 97.2 | 99.7 | 99.9 | 97.2 | 100 | 98.9 | 98.5 | 99.5 | 99.7 | 100 | 99.4 | 99.7 | 100 | | Tibet/Bharal/2008 | 97.2 | 97.8 | 97.3 | 99.8 | 96.3 | 97.3 | 96.5 | 97.5 | 97.9 | 97.2 | 96.9 | 97.2 | 96.1 | | China/Tib/07 | 97.2 | 97.8 | 97.4 | 100 | 96.6 | 97.4 | 96.6 | 97.7 | 97.9 | 97.2 | 97.0 | 97.2 | 96.5 | | China/Tibet/Geg/07-30 | 97.2 | 97.8 | 97.4 | 100 | 96.6 | 97.4 | 96.5 | 97.7 | 97.9 | 97.2 | 97.0 | 97.2 | 96.5 | | x11 | — | 97.6 | — | — | — | 97.2 | 96.4 | 97.5 | — | — | — | 97.2 | 95.3 | | China-Tibet-0701 | — | 97.8 | 97.4 | 100 | 96.6 | 97.6 | 96.5 | 97.6 | 97.9 | — | — | 97.2 | 96.5 | | India/TN/Gingee/2014 | 94.4 | 97.5 | 96.8 | 97.7 | 96.6 | 97.3 | 96.3 | 96.6 | 97.3 | 94.5 | 96.4 | 96.9 | 94.9 | | IND/TN/GIN/2014/01 | 95.3 | 97.5 | 96.9 | 97.7 | 96.6 | 97.0 | 96.1 | 96.4 | 97.2 | 94.5 | 96.2 | 96.9 | 94.9 | | Sungri/96 | 96.3 | 96.5 | 96.3 | 96.0 | 95.3 | 95.1 | 94.6 | 95.1 | 96.2 | 92.7 | 95.2 | 96.0 | 92.2 | | Izatnagar/94 | 98.1 | 97.5 | 98.2 | 98.3 | 97.9 | 97.9 | 97.1 | 97.5 | 97.9 | 93.6 | 97.1 | 96.6 | 93.3 | | Ethiopia 2010 | 96.3 | 96.8 | 97.0 | 97.2 | 96.6 | 96.8 | 95.7 | 96.1 | 97.0 | 95.4 | 95.9 | 97.5 | 93.7 | | Morocco 2008 | 96.3 | 96.9 | 97.3 | 97.4 | 97.2 | 97.3 | 96.2 | 96.4 | 97.1 | 96.3 | 96.1 | 97.5 | 93.3 | | Turkey 2000 | 97.2 | 97.0 | 97.3 | 97.3 | 96.8 | 96.1 | 96.0 | 96.4 | 97.4 | 93.6 | 96.4 | 96.6 | 94.5 | | Sungri 1996 MSD | 96.3 | 97.5 | 98.1 | 98.2 | 97.9 | 97.7 | 97.0 | 97.2 | 98.0 | 96.3 | 97.0 | 97.8 | 92.9 | | Uganda 2012 | 89.7 | 88.7 | 89.3 | 89.3 | 88.0 | 91.7 | 88.1 | 87.5 | 89.2 | 87.2 | 88.5 | 87.9 | 80.8 | | KN5/2011 | 89.7 | 88.8 | 89.3 | 89.2 | 87.8 | 89.2 | 88.0 | 87.8 | 89.3 | 87.2 | 87.2 | 88.5 | 81.2 | | Ethiopia 1994 | 88.8 | 90.6 | 88.0 | 87.5 | 84.5 | 90.0 | 89.4 | 88.8 | 97.0 | 85.3 | 88.3 | 89.1 | 83.1 | | DORCAS_87 | — | 89.3 | — | — | — | — | — | — | — | — | — | — | 80.4 | | UAE 1986 | 89.7 | 89.4 | 89.8 | 90.4 | 89.1 | 89.6 | 89.4 | 88.0 | 90.6 | 88.1 | 88.3 | 90.1 | 80.4 | | Oman 1983 | 90.7 | 89.2 | 89.8 | 90.4 | 89.0 | 89.6 | 89.2 | 87.9 | 90.5 | 88.1 | 88.2 | 90.1 | 80.4 | | Nigeria/75/1 | 92.5 | 93.5 | 93.0 | 93.8 | 93.1 | 94.3 | 94.0 | 91.7 | 94.1 | 91.7 | 92.6 | 92.5 | 87.1 | | Nigeria/75/1 (cell strain) | 92.5 | 93.3 | 93.0 | 93.8 | 93.1 | 94.2 | 94.0 | 91.8 | 94.1 | 91.7 | 92.6 | 92.9 | 87.1 | | Ng76/1 | 97.2 | 93.1 | 92.6 | 93.0 | 91.8 | 94.3 | 94.3 | 92.0 | 94.1 | 91.7 | 92.5 | 93.8 | 85.9 | | SnDk11I13 | 93.5 | 92.9 | 91.0 | 91.5 | 89.9 | 92.8 | 92.7 | 90.7 | 93.1 | 92.7 | 91.3 | 91.9 | 88.2 | | CIV/01P/2009 | 93.5 | 92.6 | 91.0 | 91.4 | 89.5 | 92.7 | 92.7 | 90.4 | 92.9 | 90.8 | 91.1 | 91.3 | 88.2 | | Ghana/NK1/2010 | 93.5 | 92.9 | 91.4 | 91.7 | 90.1 | 92.9 | 92.4 | 90.9 | 92.9 | 95.4 | 91.2 | 91.9 | 87.8 | | E32/1969 | 93.5 | 92.5 | 92.1 | 91.5 | 91.2 | 92.8 | 91.7 | 90.0 | 92.0 | 89.9 | 90.4 | 89.8 | 86.3 | | ICV89 | 94.3 | 91.5 | 90.3 | 89.9 | 88.8 | 91.7 | 89.9 | 89.2 | 91.0 | 84.4 | 89.1 | 88.8 | 83.9 |
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