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BioMed Research International
Volume 2016, Article ID 7972351, 11 pages
Research Article

Advancements in RNASeqGUI towards a Reproducible Analysis of RNA-Seq Experiments

Istituto per le Applicazioni del Calcolo, CNR, 80131 Napoli, Italy

Received 2 July 2015; Revised 11 December 2015; Accepted 3 January 2016

Academic Editor: Sílvia A. Sousa

Copyright © 2016 Francesco Russo et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

1) Supplementary Figure 1 shows how the report file is automatically written by RNASeqGUI in R-markdown format.

2) Supplementary Figure 2 describes how the report is showed via a web browser to the user after the clicking of the "Report" button in the main interface of RNASeqGUI.

3) Supplementary Figure 3 shows the code chunk that generates the Fold Change Plot depicted.

4) Supplementary Figure 4 shows the code chunk A that was executed during the generation of the boxplot and the code chunk B that was executed during the compilation of the report file from report.Rmd to report.html.

  1. Supplementary Material