BioMed Research International / 2016 / Article / Tab 3

Research Article

Feline Coronavirus 3c Protein: A Candidate for a Virulence Marker?

Table 3

Mean, maximum, and minimum nucleotide identities of 3a–c, E, and M FCoV genes from different clones.

Identification3a gene3b gene3c geneE geneM gene
Mean (%)Max (%)Min (%)Mean (%)Max (%)Min (%)Mean (%)Max (%)Min (%)Mean (%)Max (%)Min (%)Mean (%)Max (%)Min (%)

USP2/Faeces/PIF−/local199.83100.0099.50100.00100.00100.0099.4599.5099.4099.75100.0099.5099.5299.8099.30
USP6/Stomach/PIF+/local799.67100.0099.50100.00100.00100.0099.92100.0099.8099.90100.0099.5099.7799.8099.70
USP6/Faeces/PIF+/local7100.00100.00100.0099.0399.5098.6099.2099.2099.2099.7799.8099.70
USP7/Cerebrum/PIF+/local399.02100.0098.1096.39100.0088.1099.79100.0099.7099.53100.0099.1099.48100.0099.40
USP7/Faeces/PIF+/local399.42100.0097.1092.16100.0083.3097.29100.0095.50100.00100.00100.0099.54100.0099.10
USP8/UB/PIF+/local698.7099.5098.1099.89100.0099.5099.73100.0099.20
USP14/Faeces/PIF−/local495.86100.0091.5098.96100.0097.7099.48100.0098.80
USP16/Cerebrum/PIF+/local599.42100.0099.0099.3399.5099.00100.00100.00100.0099.83100.0099.5099.70100.0099.40
USP17/Cerebrum/PIF+/local299.25100.0098.5097.92100.0094.5099.33100.0098.5099.67100.0099.5099.1899.6098.70
USP17/LI/PIF+/local299.50100.0099.0099.0399.5098.6099.5099.5099.5099.67100.0099.50
USP18/Cerebrum/PIF+/local298.7099.5098.1098.68100.0098.1099.8099.8099.80100.00100.00100.0099.5399.6099.40

Intestinal samples97.70100.0091.5092.09100.0081.5095.64100.0093.2093.87100.0091.1099.59100.0099.10
Extraintestinal samples99.38100.0098.1090.09100.0075.6095.37100.0092.7095.19100.0089.9099.53100.0098.70

Max: maximum; Min: minimum; LI: large intestine; UB: urinary bladder.
Samples that only one clone was obtained or no clone was obtained at all.

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