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BioMed Research International
Volume 2017, Article ID 1829685, 13 pages
Research Article

RNA-Based Stable Isotope Probing Suggests Allobaculum spp. as Particularly Active Glucose Assimilators in a Complex Murine Microbiota Cultured In Vitro

1Institute of Precision Medicine, Faculty of Medical & Life Sciences, Furtwangen University, 78054 Villingen-Schwenningen, Germany
2AgResearch Ltd, Grasslands Research Centre, Palmerston North 4442, New Zealand
3The New Zealand Institute for Plant & Food Research Ltd, Palmerston North 4442, New Zealand
4Institute of Microbiology and Biotechnology, University of Ulm, 89069 Ulm, Germany
5Department of Biogeochemistry, Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany

Correspondence should be addressed to Markus Egert; ed.negnawtruf-sh@trege.sukram

Received 14 November 2016; Revised 9 January 2017; Accepted 18 January 2017; Published 16 February 2017

Academic Editor: Clara G. de los Reyes-Gavilan

Copyright © 2017 Elena Herrmann et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [11 citations]

The following is the list of published articles that have cited the current article.

  • Elena Herrmann, Wayne Young, Douglas Rosendale, Ralf Conrad, Christian U. Riedel, and Markus Egert, “Determination of Resistant Starch Assimilating Bacteria in Fecal Samples of Mice by In vitro RNA-Based Stable Isotope Probing,” Frontiers in Microbiology, vol. 8, 2017. View at Publisher · View at Google Scholar
  • David Berry, and Alexander Loy, “Stable-Isotope Probing of Human and Animal Microbiome Function,” Trends in Microbiology, 2018. View at Publisher · View at Google Scholar
  • Junping Zheng, Xubing Yuan, Chen Zhang, Peiyuan Jia, Siming Jiao, Xiaoming Zhao, Heng Yin, Yuguang Du, and Hongtao Liu, “ N -Acetylcysteine alleviates gut dysbiosis and glucose metabolic disorder in high-fat diet-fed mice ,” Journal of Diabetes, 2018. View at Publisher · View at Google Scholar
  • Jialin Zheng, Heng Li, Xiaojuan Zhang, Min Jiang, Chunqin Luo, Zhenming Lu, Zhenghong Xu, and Jinsong Shi, “Prebiotic Mannan-Oligosaccharides Augment the Hypoglycemic Effects of Metformin in Correlation with Modulating Gut Microbiota,” Journal of Agricultural and Food Chemistry, 2018. View at Publisher · View at Google Scholar
  • Markus Egert, Severin Weis, and Sylvia Schnell, “RNA-based stable isotope probing (RNA-SIP) to unravel intestinal host-microbe interactions,” Methods, 2018. View at Publisher · View at Google Scholar
  • Elena Herrmann, Wayne Young, Verena Reichert-Grimm, Severin Weis, Christian Riedel, Douglas Rosendale, Halina Stoklosinski, Martin Hunt, and Markus Egert, “In Vivo Assessment of Resistant Starch Degradation by the Caecal Microbiota of Mice Using RNA-Based Stable Isotope Probing—A Proof-of-Principle Study,” Nutrients, vol. 10, no. 2, pp. 179, 2018. View at Publisher · View at Google Scholar
  • Nicholas A. Scott, Anna Andrusaite, Peter Andersen, Melissa Lawson, Cristina Alcon-Giner, Charlotte Leclaire, Shabhonam Caim, Gwenaelle Le Gall, Tovah Shaw, James P. R. Connolly, Andrew J. Roe, Hannah Wessel, Alberto Bravo-Blas, Carolyn A. Thomson, Verena Kästele, Ping Wang, Daniel A. Peterson, Allison Bancroft, Xuhang Li, Richard Grencis, Allan McI Mowat, Lindsay J. Hall, Mark A. Travis, Simon W. F. Milling, and Elizabeth R. Mann, “Antibiotics induce sustained dysregulation of intestinal T cell immunity by perturbing macrophage homeostasis,” Science Translational Medicine, vol. 10, no. 464, pp. eaao4755, 2018. View at Publisher · View at Google Scholar
  • Severin Weis, Sylvia Schnell, and Markus Egert, “RNA-Based Stable Isotope Probing (RNA-SIP) in the Gut Environment,” Stable Isotope Probing, vol. 2046, pp. 221–231, 2019. View at Publisher · View at Google Scholar
  • Gerald K. Sims, Andres M. Gomez, and Ramdas Kanissery, “DNA Stable Isotope Probing to Examine Organisms Involved in Biodegradation,” Microbial Metabolism of Xenobiotic Compounds, vol. 10, pp. 55–77, 2019. View at Publisher · View at Google Scholar
  • Susakul Palakawong Na Ayudthaya, Hans van der Oost, John van der Oost, Daan M. van Vliet, and Caroline M. Plugge, “Microbial Diversity and Organic Acid Production of Guinea Pig Faecal Samples,” Current Microbiology, 2019. View at Publisher · View at Google Scholar
  • Baoming Tian, Jianhua Zhao, Wei An, Jiawei Zhang, Xin Cao, Jiale Mi, Jinsong Zhao, Yingxiao Zhang, and Juxiu Li, “Lycium ruthenicum diet alters the gut microbiota and partially enhances gut barrier function in male C57BL/6 mice,” Journal of Functional Foods, vol. 52, pp. 516–528, 2019. View at Publisher · View at Google Scholar