A New Algorithm for Identifying Cis-Regulatory Modules Based on Hidden Markov Model

Figure 3

An example of clusters of CRMs. Given coexpressed sequences, it is assumed that there are two types of CRMs to be predicted in sequences. CRMs belonging to a same type constitute a clique. The region within each pair of brackets represents a CRM. Each polygon represents a motif site within a CRM. Dotted lines connect sufficiently similar CRMs (above a given threshold). The arrow indicates the gene start site.