Review Article

Contribution of Inhibitor of DNA Binding/Differentiation-3 and Endocrine Disrupting Chemicals to Pathophysiological Aspects of Chronic Disease

Table 1

ID3 and endocrine disrupting chemicals (EDCs) interactions. Table created from CTD (Comparative Toxicogenomic Database).

Chemical nameChemical IDCAS RNInteraction countOrganism countInteractionPubMed IDAuthorsTitleYearCitationOrganism

TetrachlorodibenzodioxinD0137491746-01-6183Tetrachlorodibenzodioxin affects the expression of ID3 mRNA23238561Nault et al.Comparison of TCDD-elicited genome-wide hepatic gene expression in Sprague-Dawley rats and C57BL/6 mice.2013Toxicol Appl Pharmacol. 2013 Mar 1; 267(2): 184-91.Rattus norvegicus
Tetrachlorodibenzodioxin cotreated with TIPARP gene mutant form results in decreased expression of ID3 mRNA21496263Dere et al.Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7, and rat H4IIE hepatoma cells.2011BMC Genomics. 2011; 12: 193.Rattus norvegicus
Tetrachlorodibenzodioxin results in increased expression of ID3 mRNA19684285Kim et al.Comparative analysis of AhR-mediated TCDD-elicited gene expression in human liver adult stem cells.2009Toxicol Sci. 2009 Nov; 112(1): 229-44.Homo sapiens
17942748Boverhof et al.Inhibition of estrogen-mediated uterine gene expression responses by dioxin.2008Mol Pharmacol. 2008 Jan; 73(1): 82-93.Rattus norvegicus
15591033Watanabe et al.Comparative uterine gene expression analysis after dioxin and estradiol administration.2004J Mol Endocrinol. 2004 Dec; 33(3): 763-71.Rattus norvegicus

Bisphenol AC00678080-05-753Bisphenol A results in increased expression of ID3 mRNA26982218Porreca et al.“Stockpile” of slight transcriptomic changes determines the indirect genotoxicity of low-dose BPA in thyroid cells.2016PLoS One. 2016; 11(3): e0151618.Rattus norvegicus
25181051Ali et al.Exposure to low-dose bisphenol A impairs meiosis in the rat seminiferous tubule culture model: a physiotoxicogenomic approach.2014PLoS One. 2014; 9(9): e106245.Rattus norvegicus
25270620Schaap et al.A novel toxicogenomics-based approach to categorize (non)genotoxic carcinogens.2014Arch Toxicol. 2014 Oct 2.Mus musculus
16474171Buterin et al.Convergent transcriptional profiles induced by endogenous estrogen and distinct xenoestrogens in breast cancer cells.2006Carcinogenesis. 2006 Aug; 27(8): 1567-78.Homo sapiens
25912373Fic et al.Genome-wide gene expression profiling of low-dose, long-term exposure of human osteosarcoma cells to bisphenol A and its analogs bisphenols AF and S.2015Toxicol In Vitro. 2015 Aug; 29(5): 1060-9.Homo sapiens

EthinylestradiolD00499757-63-652Ethinylestradiol inhibits the reaction [IL1B protein results in increased expression of ID3 mRNA]12072388Evans et al.Estrogen receptor alpha inhibits IL-1beta induction of gene expression in the mouse liver.2002Endocrinology. 2002 Jul; 143(7): 2559-70.Mus musculus

Benzo(a)pyreneD00156450-32-842Benzo(a)pyrene results in increased expression of ID3 mRNA22228805Kerley-Hamilton et al.Inherent and benzo[a]pyrene-induced differential aryl hydrocarbon receptor signaling greatly affects life span, atherosclerosis, cardiac gene expression, and body and heart growth in mice.2012Toxicol Sci. 2012 Apr; 126(2): 391-404.Mus musculus
20064835Sparfel et al.Transcriptional signature of human macrophages exposed to the environmental contaminant benzo(a)pyrene.2010Toxicol Sci. 2010 Apr; 114(2): 247-59.Homo sapiens

CoumestrolD003375479-13-031Coumestrol cotreated with 2,3-bis(3′-hydroxybenzyl)butyrolactone results in decreased expression of ID3 mRNA
Coumestrol cotreated with resveratrol results in decreased expression of ID3 mRNA19167446Dip et al.Pleiotropic combinatorial transcriptomes of human breast cancer cells exposed to mixtures of dietary phytoestrogens.2009Food Chem Toxicol. 2009 Apr; 47(4): 787-95.Homo sapiens
Coumestrol results in decreased expression of ID3 mRNA

GenisteinD019833446-72-031
Genistein results in increased expression of ID3 mRNA22228119Di et al.A high concentration of genistein downregulates activin A, Smad3, and other TGF-Î2 pathway genes in human uterine leiomyoma cells.2012Exp Mol Med. 2012 Apr 30; 44(4): 281-92.Homo sapiens

Titanium dioxideC00949513463-67-732Titanium dioxide results in increased expression of ID3 mRNA23131501Gao et al.Ovarian dysfunction and gene-expressed characteristics of female mice caused by long-term exposure to titanium dioxide nanoparticles.2012J Hazard Mater. 2012 Dec; 243: 19-27.Mus musculus

2-Amino-1-methyl-6-phenylimidazo(4,5-b)pyridineC049584105650-23-5212-Amino-1-methyl-6-phenylimidazo(4,5-b)pyridine results in increased expression of ID3 mRNA15059925Fujiwara et al.Global gene expression analysis of rat colon cancers induced by a food-borne carcinogen, 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine.2004Carcinogenesis. 2004 Aug; 25(8): 1495-505.Rattus norvegicus

Carbon tetrachlorideD00225156-23-522Carbon tetrachloride affects the expression of ID3 mRNA12734012Kriete et al.Combined histomorphometric and gene expression profiling applied to toxicology.2003Genome Biol. 2003; 4(5): R32.Rattus norvegicus
Carbon tetrachloride results in increased expression of ID3 mRNA27339419Godoy et al.Gene network activity in cultivated primary hepatocytes is highly similar to diseased mammalian liver tissue.2016Arch Toxicol. 2016 Jun 23.Mus musculus

Vehicle emissionsD00133522Vehicle emissions result in increased methylation of ID3 gene25560391Tachibana et al.Prenatal diesel exhaust exposure disrupts the DNA methylation profile in the brain of mouse offspring.2015J Toxicol Sci. 2015 Feb; 40(1): 1-11.Mus musculus

1,1-Dimethylbutyl-1-deoxy-delta(9)-THCC432747111,1-Dimethylbutyl-1-deoxy-delta(9)-THC results in decreased expression of ID3 mRNA15313899 Blázquez et al.Cannabinoids inhibit the vascular endothelial growth factor pathway in gliomas.2004Cancer Res. 2004 Aug 15; 64(16): 5617-23.Mus musculus

1,2-Dithiol-3-thioneC049325534-25-8111,2-Dithiol-3-thione results in decreased expression of ID3 mRNA19162173Ren et al.Evidence for the involvement of xenobiotic-responsive nuclear receptors in transcriptional effects upon perfluoroalkyl acid exposure in diverse species.2009Reprod Toxicol. 2009 Jun; 27(3-4): 266-77.Rattus norvegicus

2-(1′H-Indolo-3′-carbonyl)thiazole-4-carboxylic acid methyl esterC548651112-(1′H-Indolo-3′-carbonyl)thiazole-4-carboxylic acid methyl ester results in decreased expression of ID3 mRNA19162173Ren et al.Evidence for the involvement of xenobiotic-responsive nuclear receptors in transcriptional effects upon perfluoroalkyl acid exposure in diverse species.2009Reprod Toxicol. 2009 Jun; 27(3-4): 266-77.Rattus norvegicus

2,3-Bis(3′-hydroxybenzyl)butyrolactoneC02949776543-15-211Coumestrol cotreated with 2,3-bis(3′-hydroxybenzyl)butyrolactone results in decreased expression of ID3 mRNA19167446Dip et al.Pleiotropic combinatorial transcriptomes of human breast cancer cells exposed to mixtures of dietary phytoestrogens.2009Food Chem Toxicol. 2009 Apr; 47(4): 787-95.Homo sapiens

DiethylstilbestrolD00405456-53-111Diethylstilbestrol results in decreased expression of ID3 mRNA26865669Ryan et al.Moving toward integrating gene expression profiling into high-throughput testing: a gene expression biomarker accurately predicts estrogen receptor α modulation in a microarray compendium.2016Toxicol Sci. 2016 May; 151(1): 88-103.Homo sapiens

Ethyl methanesulfonateD00502062-50-011Ethyl methanesulfonate results in decreased expression of ID3 mRNA24211769Sakai et al.Utilization of CDKN1A/p21 gene for class discrimination of DNA damage-induced clastogenicity.2014Toxicology. 2014 Jan 6; 315: 8-16.Homo sapiens

HexestrolD0065895635-50-711Hexestrol results in decreased expression of ID3 mRNA26865669Ryan et al.Moving toward integrating gene expression profiling into high-throughput testing: a gene expression biomarker accurately predicts estrogen receptor α modulation in a microarray compendium.2016Toxicol Sci. 2016 May; 151(1): 88-103.Homo sapiens

Hydrogen peroxideD0068617722-84-111Hydrogen peroxide affects the expression of ID3 mRNA20044591 Briedé et al.Global gene expression analysis reveals differences in cellular responses to hydroxyl- and superoxide anion radical-induced oxidative stress in caco-2 cells.2010Toxicol Sci. 2010 Apr; 114(2): 193-203.Homo sapiens

Iodoacetic acidD01980764-69-711Iodoacetic acid results in decreased expression of ID3 mRNA23397585Song et al.Monitoring of deiodinase deficiency based on transcriptomic responses in SH-SY5Y cells.2013Arch Toxicol. 2013 Jun; 87(6): 1103-13.Homo sapiens

Iopanoic acidD00748096-83-311Iopanoic acid results in decreased expression of ID3 mRNA23397585Song et al.Monitoring of deiodinase deficiency based on transcriptomic responses in SH-SY5Y cells.2013Arch Toxicol. 2013 Jun; 87(6): 1103-13.Homo sapiens

Lead acetateC008261301-04-211Lead acetate results in decreased expression of ID3 mRNA25270620Schaap et al.A novel toxicogenomics-based approach to categorize (non)genotoxic carcinogens.2014Arch Toxicol. 2014 Oct 2.Mus musculus

Lithium chlorideD0180217447-41-811Lithium chloride results in decreased expression of ID3 mRNA15711924Zhang et al.Early gene response in lithium chloride induced apoptosis.2005Apoptosis. 2005 Jan; 10(1): 75-90.Homo sapiens

Methoxyacetic acidC013598625-45-611Methoxyacetic acid results in increased expression of ID3 mRNA20864626Robinson et al.Embryotoxicant-specific transcriptomic responses in rat postimplantation whole-embryo culture.2010Toxicol Sci. 2010 Dec; 118(2): 675-85.Rattus norvegicus

MethoxychlorD00873172-43-511Methoxychlor results in decreased expression of ID3 mRNA23397585Song et al.Monitoring of deiodinase deficiency based on transcriptomic responses in SH-SY5Y cells.2013Arch Toxicol. 2013 Jun; 87(6): 1103-13.Homo sapiens

MethylcholanthreneD00874856-49-511Methylcholanthrene results in increased expression of ID3 mRNA23397585Song et al.Monitoring of deiodinase deficiency based on transcriptomic responses in SH-SY5Y cells.2013Arch Toxicol. 2013 Jun; 87(6): 1103-13.Homo sapiens

Methylmercuric chlorideC004925115-09-311Methylmercuric chloride results in increased expression of ID3 mRNA20864626Robinson et al.Embryotoxicant-specific transcriptomic responses in rat postimplantation whole-embryo culture.2010Toxicol Sci. 2010 Dec; 118(2): 675-85.Rattus norvegicus

Methylmercury compoundsD00876711Methylmercury compounds result in increased expression of ID3 mRNA23397585Song et al.Monitoring of deiodinase deficiency based on transcriptomic responses in SH-SY5Y cells.2013Arch Toxicol. 2013 Jun; 87(6): 1103-13.Homo sapiens

Methyl methanesulfonateD00874166-27-311Methyl methanesulfonate results in decreased expression of ID3 mRNA24211769Sakai et al.Utilization of CDKN1A/p21 gene for class discrimination of DNA damage-induced clastogenicity.2014Toxicology. 2014 Jan 6; 315: 8-16.Homo sapiens

MethylnitrosoureaD008770684-93-511Methylnitrosourea results in decreased expression of ID3 mRNA25270620Schaap et al.A novel toxicogenomics-based approach to categorize (non)genotoxic carcinogens.2014Arch Toxicol. 2014 Oct 2.Mus musculus

Monobutyl phthalateC028577131-70-411Monobutyl phthalate results in increased expression of ID3 mRNA20864626Robinson et al.Embryotoxicant-specific transcriptomic responses in rat postimplantation whole-embryo culture.2010Toxicol Sci. 2010 Dec; 118(2): 675-85.Rattus norvegicus

Mustard gasD009151505-60-211Mustard gas results in increased expression of ID3 mRNA15674844Sabourin et al.Time- and dose-dependent analysis of gene expression using microarrays in sulfur mustard-exposed mice.2004J Biochem Mol Toxicol. 2004; 18(6): 300-12.Mus musculus

n-ButoxyethanolC017096111-76-211n-Butoxyethanol results in decreased expression of ID3 mRNA19812364Laifenfeld et al.The role of hypoxia in 2-butoxyethanol-induced hemangiosarcoma.2010Toxicol Sci. 2010 Jan; 113(1): 254-66.Mus musculus

Nickel sulfateC0299387786-81-411Nickel sulfate results in increased expression of ID3 mRNA22714537Clancy et al.Gene expression changes in human lung cells exposed to arsenic, chromium, nickel, or vanadium indicate the first steps in cancer.2012Metallomics. 2012 Aug; 4(8): 784-93.Homo sapiens

NitrosobenzylmethylamineC014707937-40-611Nitrosobenzylmethylamine results in increased expression of ID3 mRNA17616710Reen et al.Effects of phenylethyl isothiocyanate on early molecular events in N-nitrosomethylbenzylamine-induced cytotoxicity in rat esophagus.2007Cancer Res. 2007 Jul 1; 67(13): 6484-92.Rattus norvegicus

N-NitrosomorpholineC00274159-89-211N-Nitrosomorpholine results in increased expression of ID3 mRNA19716841Oberemm et al.Toxicogenomic analysis of N-nitrosomorpholine induced changes in rat liver: comparison of genomic and proteomic responses and anchoring to histopathological parameters.2009Toxicol Appl Pharmacol. 2009 Dec 1; 241(2): 230-45.Rattus norvegicus

OctylmethoxycinnamateC11858011Octylmethoxycinnamate results in decreased expression of ID3 mRNA23397585Song et al.Monitoring of deiodinase deficiency based on transcriptomic responses in SH-SY5Y cells.2013Arch Toxicol. 2013 Jun; 87(6): 1103-13.Homo sapiens

OxophenylarsineC029341637-03-611Oxophenylarsine binds to ID3 protein23523789Kurooka et al.The metalloid arsenite induces nuclear export of Id3 possibly via binding to the N-terminal cysteine residues.2013Biochem Biophys Res Commun. 2013 Apr 19; 433(4): 579-85.Mus musculus

Perfluorooctanoic acidC023036335-67-111Perfluorooctanoic acid results in decreased expression of ID3 mRNA19162173Ren et al.Evidence for the involvement of xenobiotic-responsive nuclear receptors in transcriptional effects upon perfluoroalkyl acid exposure in diverse species.2009Reprod Toxicol. 2009 Jun; 27(3-4): 266-77.Rattus norvegicus

PhenolD019800108-95-211Phenol results in increased expression of ID3 mRNA17547211Kawata et al.Classification of heavy-metal toxicity by human DNA microarray analysis.2007Environ Sci Technol. 2007 May 15; 41(10): 3769-74.Homo sapiens

Polychlorinated biphenylsD01107811Polychlorinated biphenyls analog results in decreased expression of ID3 mRNA16474171Buterin et al.Convergent transcriptional profiles induced by endogenous estrogen and distinct xenoestrogens in breast cancer cells.2006Carcinogenesis. 2006 Aug; 27(8): 1567-78.Homo sapiens

PropiconazoleC04595060207-90-111Propiconazole results in decreased expression of ID3 mRNA21278054Nesnow et al.Propiconazole induces alterations in the hepatic metabolome of mice: relevance to propiconazole-induced hepatocarcinogenesis.2011Toxicol Sci. 2011 Apr; 120(2): 297-309.Mus musculus

Vanadyl sulfateC03402827774-13-611Vanadyl sulfate results in decreased expression of ID3 mRNA16330358Li et al.Discrimination of vanadium from zinc using gene profiling in human bronchial epithelial cells.2005Environ Health Perspect. 2005 Dec; 113(12): 1747-54.Homo sapiens

VinclozolinC02564350471-44-811Vinclozolin results in increased expression of ID3 mRNA23034163Skinner et al.Epigenetic transgenerational inheritance of somatic transcriptomes and epigenetic control regions.2012Genome Biol. 2012; 13(10): R91.Rattus norvegicus

EthylnitrosoureaD005038759-73-911Ethylnitrosourea results in increased expression of ID3 mRNA15954086Katayama et al.Microarray analysis of genes in fetal central nervous system after ethylnitrosourea administration.2005Birth Defects Res B Dev Reprod Toxicol. 2005 Jun; 74(3): 255-60.Rattus norvegicus

2,6-DinitrotolueneC023514606-20-2112,6-Dinitrotoluene affects the expression of ID3 mRNA21346803Deng et al.Analysis of common and specific mechanisms of liver function affected by nitrotoluene compounds.2011PLoS One. 2011; 6(2): e14662.Rattus norvegicus

3,4-DichloroanilineC01446495-76-1113,4-Dichloroaniline results in decreased expression of ID3 mRNA24172598Da Rocha et al.Diuron metabolites and urothelial cytotoxicity: in vivo, in vitro, and molecular approaches.2013Toxicology. 2013 Dec 15; 314(2-3): 238-46.Homo sapiens

4,4′-Hexafluoroisopropylidene diphenolC583074114,4′-Hexafluoroisopropylidene diphenol results in increased expression of ID3 mRNA25912373Fic et al.Genome-wide gene expression profiling of low-dose, long-term exposure of human osteosarcoma cells to bisphenol A and its analogs bisphenols AF and S.2015Toxicol In Vitro. 2015 Aug; 29(5): 1060-9.Homo sapiens

7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxideD01512355097-80-8117,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide results in decreased expression of ID3 mRNA19150397Lu et al.Early whole-genome transcriptional response induced by benzo[a]pyrene diol epoxide in a normal human cell line.2009Genomics. 2009 Apr; 93(4): 332-42.Homo sapiens

Bis(4-hydroxyphenyl)sulfoneC54300880-09-111Bis(4-hydroxyphenyl)sulfone results in increased expression of ID3 mRNA25912373Fic et al.Genome-wide gene expression profiling of low-dose, long-term exposure of human osteosarcoma cells to bisphenol A and its analogs bisphenols AF and S.2015Toxicol In Vitro. 2015 Aug; 29(5): 1060-9.Homo sapiens

Bismuth tripotassium dicitrateC00279157644-54-911Bismuth tripotassium dicitrate results in increased expression of ID3 mRNA15912405Magnusson et al.Gene expression changes induced by bismuth in a macrophage cell line.2005Cell Tissue Res. 2005 Aug; 321(2): 195-210.Rattus norvegicus

tert-ButylhydroperoxideD02012275-91-211tert-Butylhydroperoxide results in increased expression of ID3 mRNA15003993Ma et al.The effect of stress withdrawal on gene expression and certain biochemical and cell biological properties of peroxide-conditioned cell lines.2004FASEB J. 2004 Mar; 18(3): 480-8.Mus musculus

C646 compoundC58450911C646 compound results in decreased expression of ID3 mRNA26191083Gaddis et al.Altering cancer transcriptomes using epigenomic inhibitors.2015Epigenetics Chromatin. 2015; 8: 9.Homo sapiens

Cadmium sulfateC03712310124-36-411Cadmium sulfate affects the reaction [MTF1 affects the expression of ID3 mRNA]16221973Wimmer et al.Two major branches of anti-cadmium defense in the mouse: MTF-1/metallothioneins and glutathione.2005Nucleic Acids Res. 2005; 33(18): 5715-27.Mus musculus

Cobaltous chlorideC0180217646-79-911Cobaltous chloride results in decreased expression of ID3 mRNA19320972Hang et al.Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array.2009BMC Genomics. 2009; 10: 126.Homo sapiens

Copper sulfateD0193277758-98-711Copper sulfate results in increased expression of ID3 mRNA19549813Song et al.Physiological and toxicological transcriptome changes in HepG2 cells exposed to copper.2009Physiol Genomics. 2009 Aug 7; 38(3): 386-401.Homo sapiens

CuprizoneD003471370-81-011Cuprizone affects the expression of ID3 mRNA26577399Abe et al.Developmental cuprizone exposure impairs oligodendrocyte lineages differentially in cortical and white matter tissues and suppresses glutamatergic neurogenesis signals and synaptic plasticity in the hippocampal dentate gyrus of rats.2016Toxicol Appl Pharmacol. 2016 Jan 1; 290: 10-20.Rattus norvegicus

Sodium arseniteC01794713768-07-592ID3 protein inhibits the reaction [sodium arsenite results in increased expression of EGR1 mRNA]23523789Kurooka et al.The metalloid arsenite induces nuclear export of Id3 possibly via binding to the N-terminal cysteine residues.2013Biochem Biophys Res Commun. 2013 Apr 19; 433(4): 579-85.Mus musculus

Sodium arseniteLeptomycin B inhibits the reaction [sodium arsenite affects the localization of ID3 protein]23523789Kurooka et al.The metalloid arsenite induces nuclear export of Id3 possibly via binding to the N-terminal cysteine residues.2013Biochem Biophys Res Commun. 2013 Apr 19; 433(4): 579-85.Mus musculus

Sodium arseniteSodium arsenite affects the localization of ID3 protein16966095McNeely et al.Exit from arsenite-induced mitotic arrest is p53 dependent.2006Environ Health Perspect. 2006 Sep; 114(9): 1401-6.Homo sapiens

Sodium arseniteSodium arsenite binds to ID3 protein12760830Andrew et al.Genomic and proteomic profiling of responses to toxic metals in human lung cells.2003Environ Health Perspect. 2003 May; 111(6): 825-35.Homo sapiens

Sodium arseniteSodium arsenite which binds to ID3 protein promotes the reaction [XPO1 protein affects the localization of ID3 protein]23523789Kurooka et al.The metalloid arsenite induces nuclear export of Id3 possibly via binding to the N-terminal cysteine residues.2013Biochem Biophys Res Commun. 2013 Apr 19; 433(4): 579-85.Mus musculus

Sodium arseniteSodium arsenite results in increased expression of ID3 mRNA16966095McNeely et al.Exit from arsenite-induced mitotic arrest is p53 dependent.2006Environ Health Perspect. 2006 Sep; 114(9): 1401-6.Homo sapiens

Cadmium chlorideD01925610108-64-222Cadmium chloride results in increased expression of ID3 mRNA16221973Wimmer et al.Two major branches of anti-cadmium defense in the mouse: MTF-1/metallothioneins and glutathione.2005Nucleic Acids Res. 2005; 33(18): 5715-27.Mus musculus

Diethylhexyl phthalateD004051117-81-721Diethylhexyl phthalate results in decreased expression of ID3 mRNA19850644Ren et al.Characterization of peroxisome proliferator-activated receptor alpha-independent effects of PPAR-alpha activators in the rodent liver: di-(2-ethylhexyl) phthalate also activates the constitutive-activated receptor.2010Toxicol Sci. 2010 Jan; 113(1): 45-59.Mus musculus