Research Article

CNNdel: Calling Structural Variations on Low Coverage Data Based on Convolutional Neural Networks

Table 4

Comparisons of different model parameters.

LayersActivationLearning rateBatch rangeRun timeMortalitySpace requirements

C1 + P1 + F1 + F2Tanh0.18~512MediumHardlyLarge
ReLU0.18~512FastMedium
Softplus0.11, 8, 64SlowHigh

C1 + P1 + C2 + P2 + F1 + F2Tanh0.18~512MediumHardlyMedium
ReLU0.18~512FastMedium
Softplus0.11, 8SlowHigh

C1 + P1 + C2 + P2 + C3 + P3 + F1 + F2Tanh0.18~512MediumHardlySmall
ReLU0.18, 64FasterMedium
Softplus0.11, 8SlowHigh