CNNdel: Calling Structural Variations on Low Coverage Data Based on Convolutional Neural Networks

Table 6

Comparison with prior tools on different deletion lengths.

Deletion length	Deletions number	Pindel	SVseq2	BreakDancer	DELLY	CNNdel
50–200	147	0.2791	0.3233	0.2222	0	0.53
200–500	275	0.6484	0.6738	0.3347	0.3191	0.8
500–1000	65	0.7576	0.8611	0.4920	0.5658	0.72
1000–10000	172	0.575	0.6606	0.7203	0.7181	0.88
10000+	24	0.09	0.375	0.5	0.2857	0.72