Identification of Genes Involved in the Responses of Tangor (C. reticulata × C. sinensis) to Drought Stress

Table 1

Functional annotation and size of the differentially expressed fragments (DEFs) under drought stress in tangor.

TDF	Accession number	Sequence homology	Organism	value	Size (bp)
Transcripts indicating induced expression genes
3	GW811259	Sedoheptulose-1,7-bisphosphatase	Cucumis sativus
4	GW811260	Phosphatase 2C protein	Eucalyptus grandis
15	GW811265	rRNA intron-encoded homing endonuclease	Oryza sativa
21	GW811270	Putative cleavage and polyadenylation specificity factor 73 kDa subunit	Ricinus communis
24	GW811273	Putative fructose-bisphosphate aldolase	Ricinus communis
26	GW811275	D-Alanyl-d-alanine carboxypeptidase	Ricinus communis
29	GW811278	Putative DNA binding protein	Ricinus communis
38	GW811282	Putative cyclic nucleotide-gated ion channel	Ricinus communis
43	GW811285	Putative dihydrolipoamide dehydrogenase	Ricinus communis
80	GW811311	Auxin response factor 3	Cucumis sativus
82	GW811312	Hypoxia-responsive family protein	Citrus sinensis
132	GW811328	Putative multidrug resistance pump	Ricinus communis
137	HO008480	Cold acclimation WCOR413-like protein	Poncirus trifoliata
160	HO008493	Self-incompatibility (S-) locus region	Ipomoea trifida
171	HO008503	Chaperone protein dnaJ 15	Citrus sinensis
215	HO008535	Leucine-rich repeat family protein	Arabidopsis thaliana
221	HO008541	Cysteine protease	Citrus sinensis
223	HO008543	LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)	Arabidopsis thaliana
232	HO008550	Al-induced protein	Gossypium hirsutum
242	HO008555	Putative protein phosphatase 2c	Ricinus communis
250	HO008562	putative aquaporin PIP2.2	Ricinus communis
Transcripts indicating repressed expression genes
18	GW811267	18S rRNA gene	Symplocos paniculata
64	GW811302	Putative zinc finger protein	Ricinus communis
115	GW811320	Iron-sulfur cluster assembly scaffold protein	Chlamydomonas reinhardtii
176	HO008507	Putative succinate dehydrogenase	Ricinus communis
187	HO008516	26S proteasome regulatory subunit	Gossypium hirsutum
247	HO008559	Chromatin remodeling complex subunit	Populus trichocarpa
Transcripts indicating upregulated genes
25	GW811274	Putative 2,4-dienoyl-CoA reductase	Ricinus communis
33	GW811279	Putative ATP binding protein	Ricinus communis
34	GW811280	26S proteasome subunit RPN2b	Arabidopsis thaliana
57	GW811295	Putative eukaryotic translation initiation factor 3 subunit	Ricinus communis
60	GW811298	MutT-like protein	Cucumis sativus
65	GW811303	Putative triacylglycerol lipase	Ricinus communis
66	GW811304	Cationic amino acid transporter	Populus trichocarpa
71	GW811306	Uncharacterized protein	Citrus sinensis
72	GW811307	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor	Ricinus communis
92	GW811314	Hypoxia-responsive family protein	Citrus sinensis
99	GW811315	Putative mitochondrial carrier protein	Arabidopsis thaliana
109	GW811317	Similar to Probable pyridoxal biosynthesis protein PDX1	Vitis vinifera
110	GW811318	Ethylene-inducible protein (ER1)	Hevea brasiliensis
120	GW811325	Putative beta-amylase	Ricinus communis
136	HO008479	Putative xyloglucan endotransglucosylase/hydrolase protein 9 precursor	Ricinus communis
147	HO008487	Importin alpha	Citrus sinensis
148	HO008488	Hydrolase, hydrolyzing O-glycosyl compounds	Ricinus communis
149	HO008489	Glycine-rich RNA-binding protein	Citrus unshiu
159	HO008492	putative 26S proteasome subunit RPN2a	Capsicum chinense
161	HO008494	Transducin family protein/WD-40 repeat family protein	Arabidopsis thaliana
165	HO008497	Global transcription factor group	Populus trichocarpa
172	HO008504	Serine-type endopeptidase	Arabidopsis thaliana
179	HO008510	Putative natural resistance-associated macrophage protein	Ricinus communis
185	HO008514	Putative 60S ribosomal protein L31	Ricinus communis
197	HO008524	Putative heat shock protein binding protein	Ricinus communis
200	HO008526	Putative transcription factor IIA large subunit	Arabidopsis thaliana
201	HO008527	Anthranilate phosphoribosyltransferase	Populus trichocarpa
206	HO008529	PHD finger family protein	Arabidopsis thaliana
213	HO008534	Small heat shock protein	Solanum lycopersicum
224	HO008544	Putative ring finger protein	Ricinus communis
225	HO008545	MYB transcription factor MYB180	Glycine max
227	HO008546	Dehydrin	Citrus sinensis
229	HO008548	Putative protein COBRA precursor	Ricinus communis
234	HO008551	40S ribosomal protein S2 (RPS2D)	Arabidopsis thaliana
251	HO008563	Small heat shock protein	Solanum lycopersicum
Transcripts indicating downregulated genes
10	GW811262	DNA-binding protein-related	Arabidopsis thaliana
13	GW811264	Cytochrome P450 monooxygenase CYP90A15	Glycine max
42	GW811284	Putative pyruvate kinase	Ricinus communis
62	GW811300	Miraculin-like protein 2	Citrus jambhiri
116	GW811321	18S rRNA gene	Symplocos paniculata
126	GW811326	Hydroxyphenylpyruvate reductase	Salvia officinalis
146	HO008486	Putative beta-amylase	Ricinus communis
166	HO008498	Cytochrome P450	Citrus sinensis
177	HO008508	Putative ATP-dependent RNA helicase	Ricinus communis
193	HO008520	Putative mannose-P-dolichol utilization defect 1 protein	Ricinus communis
222	HO008542	Big map kinase/bmk	Ricinus communis
243	HO008556	Carbohydrate kinase family	Arabidopsis thaliana
245	HO008558	Chloroplast chlorophyll a/b-binding protein	Agave tequilana
248	HO008560	Photosystem I P700 chlorophyll a apoprotein A2	Anomochloa arantoidea
249	HO008561	Thiamin biosynthetic enzyme	Platanus x acerifolia
254	HO008565	ATP binding protein	Ricinus communis