Identification of Transcriptional Modules and Key Genes in Chickens Infected with Salmonella enterica Serovar Pullorum Using Integrated Coexpression Analyses

Table 2

Differentially coexpressed modules enriched with differentially coexpressed genes (DCGs).

Module	Size	GSCA.p	Hub and DCGs
Black	599	0	GJA8, LOC421988, MYOCD
Magenta	357	0	C10orf83, PPME1, NRTN, TMEM167B, ABCA5, C10orf58
Salmon	248	0	CPA5, PRSS2, ARHGEF19, INS, CELA2A, TCERG1L, LOC396296,
			LOC771434, KCNC2, XKR9
Lightcyan	155		LOC769741, TRPA1, C10orf96, CASKIN2, GMCSF, cor6
Brown	1349		—
Cyan	181		RAB36, LOC415324, UPK3B, CWH43
Lightgreen	145		CIP1, ZC3H12D, TNS3, SOCS3, LOC415844
Pink	418		ABCG8
Lightyellow	126		DEPDC1, CDCA2
Tan	287		TP53INP1, CNRIP1, NEURL, SEPP1
Midnightblue	159		LOC416257
Greenyellow	293		INVS, ARSH
Grey60	145		—
Purple	298		WDR5, NIPA2
Red	648		—
Blue	2581	1	—
Green	1056	1	—
Turquoise	2998	1	—
Yellow	1122	1	—

Note. The column “Size” gives the gene numbers contained in every module. “GSCA.p” gives the value calculated by GSCA for modules between the two different conditions and the value less than 0.05 indicates that the module is significantly differentially coexpressed. “Hub and DCGs” shows the genes which are DCGs in the top ten hub genes.