Research Article

Identifying the Genes Responsible for Iron-Limited Condition in Riemerella anatipestifer CH-1 through RNA-Seq-Based Analysis

Table 2

Genes upregulated in Riemerella anatipestifer CH-1 in iron-depleted conditions.

Gene IDGene namelog2.Fold_change. valueDescription

13715178B739_00741.2890.00021641Hypothetical protein
13715197B739_00932.8509Hypothetical protein
13715198B739_00941.2615Outer membrane receptor for Fe3+FecA
13715199B739_00951.5902Type I deoxyribonuclease HsdR
13715200B739_00963.3265Hypothetical protein
13715201B739_00973.1172Carbohydrate-binding protein
13715202B739_00983.3417Hypothetical protein
13715203B739_00993.5712Hypothetical protein
13715204B739_01003.5135Hypothetical protein
13715205B739_01013.0646Substrate import-associated zinc metallohydrolase
13715206B739_01023.4075Glycan metabolism protein RagB
13715207B739_01033.8099TonB-linked outer membrane protein, SusC/RagA family
13715231B739_01271.275DNA-binding protein
13715277B739_01733.3109TonB-dependent receptor CirA, mostly Fe transport
13715278B739_01743.6434Hypothetical protein
13715279B739_01752.413Ankyrin
13715280B739_01763.0584Predicted periplasmic protein
13715281B739_01771.0467Nitric oxide synthase
13715373B739_21371.1196Camphor resistance protein CrcB; integral membrane protein possibly involved in chromosome condensation [cell division and chromosome partitioning]
13715432B739_08911.0093Hypothetical protein
13715452B739_09121.0968Ribonuclease III
13715453B739_09131.0147Hypothetical protein
13715513B739_09731.081450S ribosomal protein L16/L10E
13715515B739_09751.071230S ribosomal protein S17
13715522B739_09821.162550S ribosomal protein L18
13715525B739_09851.252450S ribosomal protein L15
13715526B739_09861.0086Preprotein translocase subunit SecY
13715542−//−1.4285tRNA-Glu
13715606B739_10683.8593FecA
13715627B739_10891.3526Hypothetical protein
13715649B739_11121.067350S ribosomal protein L31
13715783B739_12461.071830S ribosomal protein S16
13715836B739_12991.2361Hypothetical protein
13715897B739_13601.3576Hypothetical protein
13715932B739_13951.46552-Amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
13715934B739_13971.08Outer membrane protein-related peptidoglycan-associated (lipo)protein
13715952B739_14154.7103Hypothetical protein
13715953B739_14163.7691FepA
13715954B739_14174.5479HmuY
13715956B739_14191.2458Restriction endonuclease S subunits, Hsds
13716000B739_14671.605Hypothetical protein
13716023B739_14911.2534Hypothetical protein
13716028B739_14961.0255Hypothetical protein
13716038B739_15061.2051Phosphate transport regulator
13716056B739_15251.0126OmpA
13716068B739_15371.1923Thioredoxin
13716179B739_16481.1687Hypothetical protein
13716365B739_18421.4584Hypothetical protein
13716406B739_18831.1398Preprotein translocase subunit SecG
13716420B739_18981.12213-Oxoacyl-(acyl-carrier-protein) synthase III
13716438B739_19161.1349Hypothetical protein
13716459B739_19381.0469Hypothetical protein
13716524B739_20031.1565Polyisoprenoid-binding protein; YceI-like domain
13716533B739_20121.30310.0098864Prevent-host-death protein; Antitoxin Phd_YefM, type II toxin-antitoxin system
13716610B739_20891.02360.00048509Porin
13716613B739_20921.0406Starch binding outer membrane protein SusD
13716712B739_02211.0457Gliding motility protein GldL
13716745B739_02541.1712Hypothetical protein
13716748B739_02571.0548Hypothetical protein
13716800B739_03101.1729Carbohydrate-binding protein SusD
13716803B739_03131.0601Ribonuclease G
13716804B739_03141.3277Bacterial nucleoid DNA-binding protein
13716824B739_03351.2846Hypothetical protein
13716825B739_03361.0435Hypothetical protein
13716826B739_03371.0406Ras_like_GTPase
13716848B739_03601.272550S ribosomal protein L11
13716849B739_03611.0413Transcription antiterminator
13716885B739_03971.0567IMP dehydrogenase/GMP reductase
13716908B739_04201.0126Sec-independent protein secretion pathway component
13716924B739_04361.019Predicted glycosyltransferases
13716964B739_04761.2682Hypothetical protein
13716978B739_04902.3711Ferritin-like domain
13717035B739_05471.2256RNA polymerase Rpb6
13717082B739_05941.082Iron transporter FeoB
13717083B739_05952.259Iron transporter FeoA
13717096B739_06081.6768Oxidoreductase; siderophore-interacting protein [inorganic ion transport and metabolism]ViuB
13717113B739_06251.7097RNA polymerase sigma factor
13717239B739_07531.1957Transthyretin-like protein
13717245B739_07591.1112Iron-sulfur binding protein