Detecting the Candidate Gender Determinants by Bioinformatic Prediction of miRNAs and Their Targets from Transcriptome Sequences of the Male and Female Flowers in Salix suchowensis
Table 2
Potential miRNAs identified in male flower buds of S. suchowensis.
miRNA
miRNA sequence (5′-3′)
LM (nt)
Arm
Pre-miR location
LP (nt)
ssu-miR156a
UGACAGAAGAUAGAGAGCAC
20
5′
seq517259:84..165:+
81
ssu-miR156b
UGACAGAAGAUAGAGAGCAC
20
5′
seq325710:29..80:−
51
ssu-miR160
UGCCUGGCUCCCUGUAUGCC
20
5′
seq145824:369..444:−
75
ssu-miR167a
AGAUCAUGUGGCAGUUUCACC
21
3′
seq137705:68..140:+
72
seq383115:96..168:+
ssu-miR167b
AGAUCAUGUGGCAGUUUCACC
21
3′
seq450474:97..169:+
72
ssu-miR167c
AGAUCAUGUGGCAGUUUCACC
21
3′
seq460555:421..495:−
74
seq460555:481..555:−
ssu-miR162a
UCGAUAAACCUCUGCAUCCAG
21
3′
seq430376:217..303:+
86
ssu-miR162d
UGGAGGCAGCGGUUCAUCGAUC
22
5′
seq344645:410..500:+
90
ssu-miR169a
CAGCCAAGGAUGACUUGCCGG
21
5′
seq159785:89..210:−
121
ssu-miR169b
CAGCCAAGGAUGACUUGCCGG
21
5′
seq167083:107..214:+
107
seq166207:31..138:+
ssu-miR172b
GCAGCACCAUCAAGAUUCACA
21
5′
seq555414:28..136:+
108
ssu-miR172c
GCAGCACCAUCAAGAUUCACA
21
5′
seq562308:14..122:−
108
ssu-miR396a
UUCCACAGCUUUCUUGAACUG
21
3′
seq114772:89..196:+
107
ssu-miR396b
UUCCACAGCUUUCUUGAACUG
21
3′
seq307347:218..305:−
87
ssu-miR472a
UUUUCCCAACUCCACCCAUCCC
22
3′
seq467610:63..125:+
62
ssu-miR472c
UCUUGCCUACUCCUCCCAUUCC
22
3′
seq106361:38..109:+
71
ssu-miR1448a
CUUUCCAACGCCUCCCAUAC
20
3′
seq106361:219..287:+
68
ssu-miR1448b
CUUUCCAACGCCUCCCAUAC
20
3′
seq83628:392..461:−
69
seq83628:422..491:−
ssu-miR7841
GGGGGUUGCUGUCAAGCAUAA
21
3′
seq306990:54..154:−
100
ssu-miR6423a
CCGCUGUCGCCACUAUCUUCCU
22
5′
seq268392:35..125:+
90
ssu-miR6423b
CCGCUGUCGCCACUAUCUUCCU
22
5′
seq228745:13..103:+
90
ssu-miR6423c
CCGCUGUCGCCACUAUCUUCCU
22
5′
seq199601:0..96:+
96
ssu-miR6423d
CCGCUGUCGCCACUAUCUUCCU
22
5′
seq100248:45..105:−
60
seq148917:45..105:−
LM: length of miRNA; Arm: location of mature miRNAs on secondary stem-loop structures of pre-miRNA sequences; Pre-miR location: miRNA precursor’s location in ESTs of willow male flower buds; LP: length of pre-miRNA.