BioMed Research International / 2018 / Article / Tab 2

Research Article

Complex Analyses of Short Inverted Repeats in All Sequenced Chloroplast DNAs

Table 2

cpDNA sizes and S-IR frequencies and lengths.

Group nameNumber of seq.Median size [bp]Shortest sequenceLongest sequenceIR/kbp
Mean
range
Longest S-IR for 50% of seq. [bp]

Euglenozoa991,616Monomorphina aenigmaticaEuglena gracilis6818
(74,746 bp)(143,171 bp)56 – 79
Stramenopiles37122,660Aureococcus anophagefferensCylindrotheca closterium5725
(89,599 bp)(165,809 bp)43 – 69
Rhodophyta60171,284Cyanidioschyzon merolaeBulboplastis apyrenoidosa5919
(149,987 bp)(610,063 bp)34 -83
Chlorophyta90157,916Ostreococcus tauriFloydiella terrestris6127
(71,666 bp)(521,168 bp)27 – 102
Zygnemophyceae11142,017Spirogyra maximaCosmarium botrytis5124
(129,954 bp)(207,850 bp)32 – 64
Bryophyta8123,868Syntrichia ruralisTakakia lepidozioides6732
(122,630 bp)(149,016 bp)44 – 78
Polypodiopsida49151,126Diplazium unilobumLygodium japonicum3818
(127,840 bp)(157,260 bp)34 – 52
Acrogymnospermae85127,659Cathaya argyrophyllaMacrozamia mountperriensis4423
(107,122 bp)(166,341 bp)38 – 50
Basal magnoliophyta13159,881Schisandra chinensisTrithuria inconspicua4018
(146,859 bp)(165,389 bp)38 – 42
Magnoliidae41159,443Cassytha filiformisPiper kadsura4018
(114,622 bp)(161,486 bp)39 – 43
Alismatales14163,856Zostera marinaWolffiella ryophyte4622
(143,877 bp)(169,337 bp)40 – 50
Dioscoreales10154,205Burmannia oblongaTacca leontopetaloides4722
(39,386 bp)(162,477 bp)42 – 63
Liliales41152,677Amana wanzhensisHeloniopsis tubiflora4518
(150,576 bp)(158,229 bp)42 – 46
Asparagales125153,953Oberonia japonicaCypripedium formosanum4424
(142,996 bp)(178,131 bp)42 – 64
Commelinids290139,171Aegilops cylindricaCarex neurocarpa4117
(113,490 bp)(181,397 bp)38 – 52
Early-diverging eudicotyledons49157,817Kingdonia unifloraBerberis koreana4219
(147,378 bp)(166,758 bp)39 – 45
Santalales9128,744Schoepfia jasminodoraErythropalum scandens4518
(118,743 bp)(156,154 bp)41 – 48
Saxifragales10152,692Phedimus takesimensisLiquidambar formosana4120
(147,048 bp)(160,410 bp)40 – 43
Caryophyllales32151,686Carnegiea giganteaDrosera rotundifolia4519
(113,064 bp)(192,912 bp)40 – 47
Asterids398153,377Monotropa hypopitysAdenophora divaricata4319
(35,336 bp)(176,331 bp)38 – 61
Rosids522159,441Cytinus hypocistisPelargonium transvaalense4520
(19,400 bp)(242,575 bp)35 – 75
Rest662155,196Pilostyles aethiopicaPleodorina starrii4620
(11,348)(269,857)28 – 192

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