Analysis of the Cancer Genome Atlas Data Reveals Novel Putative ncRNAs Targets in Hepatocellular Carcinoma

Table 1

Top ten differentially expressed genes (DEGs) from total RNA-seq and microRNA RNA-seq.

Total RNA-seq DEGs
Upregulated in tumor		Downregulated in tumor
Transcript	Fold change	Transcript	Fold change
SIRT1	15.32119	PAPPA2	-5.66486
RPL28	11.29295	TNR	-4.59590
LINC0161	10.83190	SNHG21	-4.51615
CACNB3	10.71749	CALHM6	-4.44294
CREM	10.54143	LCMT1-AS	-4.39991
GOLGA8B	10.32588	BHMT2	-4.34723
SLC46A2	10.16996	PRDM1	-4.33354
LINC0044	10.10149	CPLX4	-4.29631
NUP85	9.78697	PTP4A2	-4.06166
CFAP44-AS	9.67638	GEMIN4	-3.99574
DE miRNAs
Upregulated in tumor		Downregulated in tumor
Transcript	Fold change	Transcript	Fold change
hsa-mir-767	8.99037	hsa-mir-490	-3.58293
hsa-mir-105-2	8.90799	hsa-mir-4686	-3.40137
hsa-mir-891a	8.86653	hsa-mir-1258	-2.95466
hsa-mir-105-1	8.19189	hsa-mir-139	-2.00361
hsa-mir-3923	7.94124	hsa-mir-424	-1.96325
hsa-mir-520f	7.91529	hsa-mir-4683	-1.94045
hsa-mir-520c	7.63784	hsa-mir-934	-1.92190
hsa-mir-518e	7.37922	hsa-mir-130a	-1.86453
hsa-mir-520b	7.17289	hsa-mir-873	-1.84610
hsa-mir-520a	7.00665	hsa-mir-6503	-1.76457

regulatory lncRNA.